Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0375 ATGAAATGCGATGCGAGGATGATAAGGTTAAGACATGGAGCTAACAAGTTTGGTTGTTTTGGTAAATCATGGACCAATGTTCGTCCTTCCTTCCATTCCCTCTCATATTCATTCCCAGCTACAGATCCCACTGTACTGCACAGAGTTCTCGAACGCTGTAGAGTCTCTACGGATTTAAAAACCGCCACTAAAACCCATGCAAGAGTTGTTGTACTTGGCTTTGCAACTTACCCTTCTCTCGTGGCATCTCTTATATCAACCTATGCCCAATGTCATCGACCCCACATTGCCCTTCACGTTTTCTCCAGGATTTTGGACCTATTCAGCATGAATTTGGTCATTGAGAGTTTAGTGAAAGGTGGGCAATGTGACATTGCCAAGAAGGTGTTTGGCAAAATGTCTGTTAGAGATGTGGTCACGTGGAACTCCATGATTGGAGGTTATGTAAGAAACTTGCGCTTCTTCGATGCATTGAGTATTTTCCGGAGGATGCTGAGTGCCAAGGTTGAACCTGATGGGTTCACCTTTGCTTCGGTGGTTACCGCATGTGCACGCCTTGGGGCTCTTGGCAATGCCAAGTGGGTGCATGGTTTGATGGTAGAGAAAAGGGTTGAGCTGAATTATATTTTGAGTGCTGCGTTGATTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAGACAGGTTTTTGAAGAGGTTGCGCGTGATCATGTGTCAGTTTGGAATGCTATGATTAGTGGGTTGGCAATTCATGGGCTTGCAATGGATGCGACCTTGGTGTTTTCGAGGATGGAGATGGAGCATGTTTTGCCGGATTCTATTACTTTTATTGGGATTTTAACTGCTTGTAGTCACTGTGGATTGGTTGAAGAAGGTCGCAAGTATTTTGGTATGATGCAGAACCGCTTTATGATTCAGCCGCAGCTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCATGGAAGAAGCCTATGCTGTGATTAAGGAGATGCGTATGGAGCCTGATATTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAATCCACAGAAAGAAAGAACTTGGTGAAGTTGCCATTGCTAATATATCTCGCTTAGAGAGTGGAGACTTTGTGTTGTTGTCAAATATGTATTGCTCTTTAAACAACTGGGATGGTGCTGAGAGAGTGAGACGGATGATGAAAACCAGAGGGGTTCGGAAAAGCCGTGGTAAGAGTTGGGTTGAATTGGGGGACGGCATTCACCAATTCAATGCAGCTTATCAGTCTCATCCTGAAATGAAATCAATTTACAGAGTGCTGGAAGGTTTGATCCAAAGGGCCAAGTTGGAGGGATTCACACCCTTGACAGATCTGGTTTTGATGGATGTTTCCGAAGAGGAAAAGGAGGAAAATTTAATGTTTCATAGTGAGAAGTTGGCCATGGCCTATGCGGTCCTGAAAACTAGCCCTGGAACAAAAATCAGGATTTCCAAAAACCTGCGTATCTGTTTAGATTGTCATAATTGGATTAAAATCGTGTCAAAAATATTAAACAGAAAGATAATCGTGAGGGATCGGATCCGTTTTCACCAATTTGAAGGCGGTGTTTGCTCTTGCAAAGACTACTGGTAG 1629 0.4377 MKCDARMIRLRHGANKFGCFGKSWTNVRPSFHSLSYSFPATDPTVLHRVLERCRVSTDLKTATKTHARVVVLGFATYPSLVASLISTYAQCHRPHIALHVFSRILDLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLESGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0375 542 Pfam PPR repeat family 136 185 IPR002885 -
Gso9g0375 542 Pfam DYW family of nucleic acid deaminases 450 542 IPR032867 GO:0008270
Gso9g0375 542 Gene3D Tetratricopeptide repeat domain 213 449 IPR011990 GO:0005515
Gso9g0375 542 Gene3D Tetratricopeptide repeat domain 44 192 IPR011990 GO:0005515
Gso9g0375 542 PANTHER OS07G0578800 PROTEIN-RELATED 37 488 IPR045215 GO:0003723|GO:0009451
Gso9g0375 542 TIGRFAM PPR: pentatricopeptide repeat domain 313 338 IPR002885 -
Gso9g0375 542 TIGRFAM PPR: pentatricopeptide repeat domain 241 273 IPR002885 -
Gso9g0375 542 TIGRFAM PPR: pentatricopeptide repeat domain 139 172 IPR002885 -
Gso9g0375 542 Pfam E motif 355 414 IPR046848 -
Gso9g0375 542 Pfam PPR repeat 213 236 IPR002885 -
Gso9g0375 542 Pfam PPR repeat 276 302 IPR002885 -
Gso9g0375 542 Pfam PPR repeat 312 338 IPR002885 -
Gso9g0375 542 Pfam PPR repeat 241 268 IPR002885 -
Gso9g0375 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 488 - -
Gso9g0375 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Gso9g0375 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0375 Gso-Chr9 3657599 3660042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0375 111 542 Glycoside Hydrolase AT3G49170 39.180 1.70e-107 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0375 - - gmx:100788229 1091.64