Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0348 ATGGGTGTTTACACTGACACAAATGAGTACCCCTCTCCAATCTCTCCATCAAGGTTGTTCAAGGCCTTGGTTGTTGATGCTCACGACCTCATTCCAAAACTTCTGCCACATGCTGTGAAGAGCATTGAAATCATACAAGGAAATGGGGGGCCAGGAAGCATCAAACAGTTTAACTTTGTTGAAGGCAGCCAAGTGAAAAGTGTTAAGAACCGGATTGACGAGATAGACGAGGACACATTTACTTACAATTACTCATTGATTGAAGGTCAAGCATTGAAGGATAAGTTTGCATCCATTGCTCATGAGATTAAGTTTGAAGCAGCACCTGATGGTGGTAGCGTGAGTAAAGTAACAAACAAGTATTATCTTAAAGGTGATGTCCAGATTAATGAAGAGGACACATTAAGACTTATCACGATAGAGTGA 426 0.4108 MGVYTDTNEYPSPISPSRLFKALVVDAHDLIPKLLPHAVKSIEIIQGNGGPGSIKQFNFVEGSQVKSVKNRIDEIDEDTFTYNYSLIEGQALKDKFASIAHEIKFEAAPDGGSVSKVTNKYYLKGDVQINEEDTLRLITIE* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0348 141 CDD Bet_v1-like 7 133 - -
Gso9g0348 141 Pfam Pathogenesis-related protein Bet v 1 family 3 132 IPR000916 GO:0006952
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0348 141 SUPERFAMILY Bet v1-like 3 134 - -
Gso9g0348 141 PANTHER - 1 133 - -
Gso9g0348 141 Gene3D - 2 139 IPR023393 -
Gso9g0348 141 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0348 Gso-Chr9 3355667 3356755 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0348 - - gsj:114367747 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1216 15 12127668 12128678 Gso9g0348 9 3355667 3356755 GST
Gso9g0348 9 3355667 3356755 Gso7g2060 7 44555725 44556742 PCT
Gso9g0348 9 3355667 3356755 Gso17g0240 17 2194796 2195802 PCT