Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1879 ATGAGTATGATGTCTATTATGCATGCAATGTCGATCAGAAGCAGCGCTTTCTTTTGCTTTCAAATAAATTGCTCCGATTCAAAGCAAGGTCGTGGTTTTGGAGAAAACACTAACAGTAACAGTAACAGTAACAGGATTAAGACCAACAAATCTGACAAGGGATCAACAACTAAACAGTCTCGCCCTCTATCTTCTCAGGCACCCCGTTTAAGTTCACAACTTGACGGCAAATCTAGGAACGACTTTTTGGATGTTGACTTTGAGGAACGGCTAAAAGCAGTTAGAAGGTCAGCACTTGAGCAGAAGAAGGCAGAGGAGGAAAAAGAATTTGGAGCAATTGACTATGATGCACCAATTCCTTCCGACAATAAGACAATTGGCCTTGGTACTAAGATTGGAGTAGGGGTAGCTGTTGCAGTCTTCGGTCTGGTTTTTGCTTTTGGTGATTTTCTTCCATCAGGAAGTGTTAGTCCCACTGAAGACAGTGCTGTGGTCAATAGTAAGTTGTCTGAGGAGGATAAAGCTACTCTTCAGAGTAGGCTCAAGGAGTTTGAAGCAACATTAAGTAATTCCCCAAGAGATCAAATTGCTCTTGAAGGAGCTGCAGTAACTTTGGCTGAACTAGGGGAATATGCAAGAGCTTCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGATGTTTTTCGTTTGCTTGGAGAAGTTAAGTACGAACTCAAAGATTATGAAGGGAGTGTTGCCGCATATAAAAGCTCAGCAAGGGTGTCCAAAGATATCCAATTTGAAGTTCTCCGTGGCCTTTCCAATTCATTACTTGCTGCCAAAAAGCAAGAGGAGGCTGTTCAATTACTTTTGGCCTATCGTGAGCATCTGAGTTCAGAAAACTTGAGCAAAAATTCTGATAGCAACCCAACAGACTCACAAAAGCTGGATCCAGTCCAAGTTGAATTACTTCTAGGGAAAGCCTACTCAGATTGGGGCCATGTCAGTGATGCTGTAACTGTTTATGATCAGCTCATATCTACTCACCCTAATGATTTTCGTGGATACTTAGCTAAGGGAATCATCCTAAAAGAAAACAAAAATATTGGTGATGCAGAAAGGATGTTCATACAAGCTAGGTTCTTTGCACCAGATAGAGCCAAAGCACTTGTGGACCGTTATTCAAGATGA 1182 0.4137 MSMMSIMHAMSIRSSAFFCFQINCSDSKQGRGFGENTNSNSNSNRIKTNKSDKGSTTKQSRPLSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDYDAPIPSDNKTIGLGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKATLQSRLKEFEATLSNSPRDQIALEGAAVTLAELGEYARASSLLDDLTKEKPNDADVFRLLGEVKYELKDYEGSVAAYKSSARVSKDIQFEVLRGLSNSLLAAKKQEEAVQLLLAYREHLSSENLSKNSDSNPTDSQKLDPVQVELLLGKAYSDWGHVSDAVTVYDQLISTHPNDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDRAKALVDRYSR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1879 393 Pfam Tetratricopeptide repeat 202 256 - -
Gso8g1879 393 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 12 393 - -
Gso8g1879 393 Gene3D Tetratricopeptide repeat domain 165 391 IPR011990 GO:0005515
Gso8g1879 393 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 12 393 - -
Gso8g1879 393 Coils Coil 88 108 - -
Gso8g1879 393 SMART tpr_5 350 383 IPR019734 GO:0005515
Gso8g1879 393 SMART tpr_5 316 349 IPR019734 GO:0005515
Gso8g1879 393 SMART tpr_5 229 262 IPR019734 GO:0005515
Gso8g1879 393 MobiDBLite consensus disorder prediction 29 77 - -
Gso8g1879 393 SUPERFAMILY TPR-like 181 386 IPR011990 GO:0005515
Gso8g1879 393 ProSiteProfiles TPR repeat profile. 316 349 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1879 Gso-Chr8 18341131 18348228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1879 - - gmx:100777868 721.465