Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1872 ATGGCTCTGGTCGGAGTTGAAGTGAAGCATGCGGCGGAGGGCGCACCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGCCTCCGCCACTACTATTCTCACAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATGTTCTTCACTTAGTTCTGCCAAGTAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCCGATTCTACTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGTACTATGCTGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAGACTGAAAAAAACATGTCATTGCGGAAGTTGTGGAAGTGA 1257 0.4519 MALVGVEVKHAAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1872 418 Gene3D - 336 413 - -
Gso8g1872 418 Coils Coil 39 73 - -
Gso8g1872 418 Pfam AAA+ lid domain 354 396 IPR041569 -
Gso8g1872 418 Gene3D - 37 149 IPR012340 -
Gso8g1872 418 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 43 403 IPR005937 GO:0005737|GO:0030163|GO:0036402
Gso8g1872 418 Gene3D - 150 331 IPR027417 -
Gso8g1872 418 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 24 415 - -
Gso8g1872 418 CDD AAA 163 330 - -
Gso8g1872 418 SMART AAA_5 193 333 IPR003593 -
Gso8g1872 418 ProSitePatterns AAA-protein family signature. 301 319 IPR003960 GO:0005524|GO:0016887
Gso8g1872 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 407 IPR027417 -
Gso8g1872 418 Pfam ATPase family associated with various cellular activities (AAA) 197 330 IPR003959 GO:0005524|GO:0016887
Gso8g1872 418 PANTHER BNAA02G04630D PROTEIN 24 415 IPR035261 GO:0036402
Gso8g1872 418 Pfam Proteasomal ATPase OB C-terminal domain 84 139 IPR032501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1872 Gso-Chr8 18292820 18296791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1872 158 414 Miscellaneous Gene Families AT5G58870 40.541 1.33e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1872 K03066 - gmx:100776268 805.823