Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1800 ATGATGTCAGTGAAAAATTTTCCTGAAGAATGCTGGGAATTGGTGTTCAGATTCATTGGCCATGGTCGTCATTTGGAATCTCTATCTTTGGTTTGCAAGCAGTTCCTTTCCATCACAAACCGGCTTCAATTTTCTCTCACAATACATGATCCAACCATTCCAGTCCTTCCTAGGCTACTCCTGAGGTTTCCAAGGCTCAGAATCTTAGACCTCAGTCACTTGAATAGCCACCATGAAGGCTTGCTTCGTCAAATTTCACAATCCGGTTTGGAACTTGATTTGCTTAATCTGTCCAACCAGAGAACACTTCCTGTTGATGGCTTGCGAGAACTCGGCTCAAAGATGAAAAATTTGAGGGTGCTGATCTGCTCAAACATTGGTTCTCTTCGCGATAGCCATCTTGTAGTCATGGCTTATTGTTTCCCATTTCTCGAAGAGCTTGACATAAGCTTCCCATTGGATTCTCAAGCATCTGATTTTGGGGTGCTAAGGCTGTCTTCAATGCTTGAGAATCTTCGCAAGATTAATATCTCTGGTAATTACTTGATCACTGATAAATCCTTGTTCTCTCTATGCCAAAACTGTTTGTCATTGCAAGAGATTTCATTCTTCACCTGTTTTAAGATCACTCAATTAGGCATTGCCTCCGCGATCCGCCTCAGACCCGGTTTGAATTCCATTTCCTTTAACATTGAAAAGAAAAGAATACATGGACCTGGTTTAACACTCGCCCCCATTGACTTGGATTTGATTGATTCATTCAGCAGTTTGAAAAGGTTAACTGCTATTGATTTGTCAAATTCTGTTATCTCGGATGAGTTTCTCTTTGCAGTTGCAGAAGGTGGAGGTCTTCTGCTAAAGAAACTTATCCTCCAAAACTGCTGCAATTGCACATTTTCAGGAATCTCTTATGTGCTATCCAAATGTCAATCTGTTCAATGCTTGGATCTTCGGAAAGCTGATTTTTTAACTGATCAATGTATCCGCAAGTTATCTCTATTTCTTCTTAACTTAACTTCTATAAACCTTAGTGGTTGTTGCCAGCTGACCAATTCAACATTTTTCATACTCACAAGAAACTGTTCTTCGCTCAGTGAGATCAAAATGGAGAGAACATATCTTGGGGTGGAAGGGGAAGAAGAAGAAGAAGATTCAATGCCAGATTCTTTTGTCAACCTTGAAGTGAAAAAACTTTATTTGGGTGATAATGTTTTGCTGAGTGATGCAAGTCTGATAAAATTTGTTTCCATTTGCCCCAGTTTGCAGCTTCTTGACTTAACCGGTTGCGAGGGTGTTTCTGGTGAATGTATTGGTGATGTTTTGAAGAGATGCTGTGAGATAAGGCATTTGAACCTGGCCTATACAGGAATGAAAGTGTTTGAGATGATGGACTTTGAAGTTTCCCAACTTGAGGTGTTGAACTTGTCAGGGTCAAGAATTGAGGATGAAGCACTTTCAATAATCTCAAAGAGGTGTAGTGGACTACTACTTCTGGATATCCAGAGTTGCTGGCATGTTACACCAAAGGGTGTAGGTGAAATAGTTGAAAAATGCAGGACGTTGAAAGAGTTGAATCTAAAGAATTGTAGGTTGGTGAGTGATGATTTTGTTGCTTGGGTGGAGATTTCAAGACCATCATTGAGAACAATAACAACACCTTCTGATGTTGGTGTTTATTGCTGA 1683 0.4011 MMSVKNFPEECWELVFRFIGHGRHLESLSLVCKQFLSITNRLQFSLTIHDPTIPVLPRLLLRFPRLRILDLSHLNSHHEGLLRQISQSGLELDLLNLSNQRTLPVDGLRELGSKMKNLRVLICSNIGSLRDSHLVVMAYCFPFLEELDISFPLDSQASDFGVLRLSSMLENLRKINISGNYLITDKSLFSLCQNCLSLQEISFFTCFKITQLGIASAIRLRPGLNSISFNIEKKRIHGPGLTLAPIDLDLIDSFSSLKRLTAIDLSNSVISDEFLFAVAEGGGLLLKKLILQNCCNCTFSGISYVLSKCQSVQCLDLRKADFLTDQCIRKLSLFLLNLTSINLSGCCQLTNSTFFILTRNCSSLSEIKMERTYLGVEGEEEEEDSMPDSFVNLEVKKLYLGDNVLLSDASLIKFVSICPSLQLLDLTGCEGVSGECIGDVLKRCCEIRHLNLAYTGMKVFEMMDFEVSQLEVLNLSGSRIEDEALSIISKRCSGLLLLDIQSCWHVTPKGVGEIVEKCRTLKELNLKNCRLVSDDFVAWVEISRPSLRTITTPSDVGVYC* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1800 560 SMART LRR_CC_2 169 194 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 418 443 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 335 360 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 492 517 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 467 491 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 257 281 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 518 545 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 89 114 IPR006553 -
Gso8g1800 560 SMART LRR_CC_2 195 220 IPR006553 -
Gso8g1800 560 PANTHER NODULIN-LIKE PROTEIN 5 320 - -
Gso8g1800 560 PANTHER NODULIN-LIKE PROTEIN 247 544 - -
Gso8g1800 560 Gene3D Ribonuclease Inhibitor 459 552 IPR032675 -
Gso8g1800 560 Gene3D Ribonuclease Inhibitor 388 458 IPR032675 -
Gso8g1800 560 Pfam Leucine Rich repeat 517 534 IPR001611 GO:0005515
Gso8g1800 560 SUPERFAMILY RNI-like 249 540 - -
Gso8g1800 560 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Gso8g1800 560 Gene3D Ribonuclease Inhibitor 243 375 IPR032675 -
Gso8g1800 560 PANTHER UNCHARACTERIZED 5 320 - -
Gso8g1800 560 PANTHER UNCHARACTERIZED 247 544 - -
Gso8g1800 560 SUPERFAMILY RNI-like 51 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1800 Gso-Chr8 17629142 17631324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1800 K10268 - gmx:100811565 1066.99