Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1624 ATGAGTGGGCCAGACACTCCTCTCGCTCACGCTCTCAGCCTCGGCCCAAATATAAAACCCCAACACACAGAAAGAAGGAAAGGCCTCAATATCTTTCGTTTCGTTTTGCCCTTTCTTCAAGCCAACCTCTTCACAACTCTTCTTTGTTCCTTTCTTCCTCTCACTACCACCATGATCACAGTAAGCGTAAGATGGCAAAAGGAGATTTTCAAAGATGTAGAACTTGACACTACCCAGTCTGCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCTGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCAGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTCAACTTGGGAAACACATGTTATATGAATTCAACATTGCAATGCCTCCATTCCGTACCTGAATTAAAGTCAGCTTTGACTAATTATTCACATTCAGGACGAAACAACGATGTCGATCAATCTTCTCATTTGTTGACCATTGCAACCCGTGACTTGTTCAACGAGCTTGATAAAAGTGTGAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTTTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACTCTCTCTCAGTCCCTCAGATCCCTTGGAATTAGTGAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCACGAAGGGATAAAACATGGGTTAAAATCTGAGTTAGAAAAGGCTTCGCCTGTATTGGGCCGTAGTGCTACATACTTGAAGGAATCACGCATCAATGCCTTGCCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGAAAGTAGATTATCCCCTGGAGTTGGATGTTTATGATTTTTGTTCAGATGATCTTCGTAAAAAATTGGATGCTCCTAGACAGATCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAGTGATGTAAAAATGTCTGATGCTGAGGGATCATTGAATGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGCAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGACGATGACAATCCCAAACCAAAACTCGAAGAAGACATAACTAGACTATCCGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA 1575 0.4171 MSGPDTPLAHALSLGPNIKPQHTERRKGLNIFRFVLPFLQANLFTTLLCSFLPLTTTMITVSVRWQKEIFKDVELDTTQSAYVFKCQLYDLTGVPPERQKIMVKGGLLKGQKLMMMGTADEVVKTPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALTNYSHSGRNNDVDQSSHLLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSLGISENPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGIKHGLKSELEKASPVLGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQILRNEEGKKLGLKVNEKSSVQKESDVKMSDAEGSLNGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKLEEDITRLSGGGDWHMAYIIMYKARVVSV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1624 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 150 165 IPR018200 GO:0004843|GO:0006511
Gso8g1624 524 MobiDBLite consensus disorder prediction 412 439 - -
Gso8g1624 524 CDD Ubl_USP14_like 58 120 - -
Gso8g1624 524 Gene3D Cysteine proteinases 143 523 - -
Gso8g1624 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 455 473 IPR018200 GO:0004843|GO:0006511
Gso8g1624 524 Pfam Ubiquitin carboxyl-terminal hydrolase 150 517 IPR001394 GO:0004843|GO:0016579
Gso8g1624 524 SUPERFAMILY Ubiquitin-like 56 135 IPR029071 -
Gso8g1624 524 Gene3D - 57 118 - -
Gso8g1624 524 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 149 520 IPR028889 -
Gso8g1624 524 CDD Peptidase_C19A 150 518 - -
Gso8g1624 524 ProSiteProfiles Ubiquitin domain profile. 59 114 IPR000626 GO:0005515
Gso8g1624 524 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 523 IPR044635 GO:0004843|GO:0016579|GO:0043161
Gso8g1624 524 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 523 - -
Gso8g1624 524 SUPERFAMILY Cysteine proteinases 147 518 IPR038765 -
Gso8g1624 524 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1624 Gso-Chr8 15873583 15890843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1624 K11843 - gmx:100787481 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0106 7 960152 969217 Gso8g1624 8 15873583 15890843 GST