Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1569 ATGTCTTCAATGATGGTGAAGGGGAAGGTGGTGTTGATTCGGAAGTATGTGCTTCAAACCATATCCAATGCCAAGGAGCTTGTTGGCAATGGCTTCAACCTAATTGGCTCATCAGTCGAATATGATATTACTAAATCTGTGTTTTTCAACTTGATTAGCCGCACCAAGTCATCCAAGGATAATTATTCAAAAGATGGAAAGGAGGCCTGTTTAGAGAATAATGCTTCGGTGTTACGAAGCTTGGGAGGGAAAGAGGAGGAATTCGACATTTATTTTGAATGGGATGCTACTGAGATGGGAATTCCAGGAGCATTTTACGTAAAAAACCATATGAAAGATGAGTTCTTCCTTGTGAGTATGACTCTTGAATATCCACTTCCAACATGTGACCGCCACAAGGACAAAAACAGTATCATTCACTTTCTTTGTAACTCATGGGTTCACAATCATGGATGCTACAAAACGCATCATCGCATTTTCTTTGACAATAATCCATATCTCCCTGGTAATCAAACACCAGAGGCATTACGAAAGTATAGAGAAGAAGAGTTGGATAATTTAAGAGGAGATGGAACAGGAGAACGCAAGGAATGGGATAGGATCTATGATTATGATGTCTATAATGATTTGGGCTATCTAGATAGTGATGAAAAGGATGATCACCCAATCCTTGGAGGCACCCTCTATCCCTACCCTCGTAGGGTTAGAACTGGCAGAAAACTCCTCAATGACAAAAATATTAATGGTGGTAAATACGAGAAACCTGCAGACAATGTTATTTATGTGCCAAGGGATGAAAATTTCAGTCTGGAGAAGACAACAGATTTCCTTGAATTTGGAAAGAAATCTTTATCTGGAAAAGTGGAACCCTTGCTCCTATCTTTATATTTAAAGCTCACACCGAACGAGTTTAATGGCTTTGAAGAAGTGCAGAGACTGTATGATCAAGAAGGTGGCATAAAGCTGCCTATATCGACCACTATGGGTACTGAAAATGTCCTTAAGTTTCCAACACCTCATGTAATCCAAGCTAGCACATTTGCATGGATGACTGACGAAGAATTTGCAAGAGAGATGATTGCCGGTGTAAACCCAAATGTAATTCGCCTTCTAAAAAGGGAGGATCTCGCACCGCGAAGGAGGCTAGATTGCAAATGTAATCATAGTACAATAACAAAAGAAAAATTGGAGATTAACATGGGTGGGGTCACAGTAGATGAGGCATTTTGTAATAAGAGATTATTCATATTGGATTACTATGATGCATTCATGCCATATTTGAGGAAGATAAACGAGCTAGATTCTGCAAAGGCTTATGCCACGAGGACATTCTTGTTCTTGAAAGATGATGGAACTTTGAAGCCACTTGCTATTGAATTAAGCAAGCCGCATCAATGTGTATATGTCCTGCCACATCCACCACATATGCGTCCATCTCCATTTCTACATTATTATTTTCCGAGCCAAGTGGTGTTGCCTGCAGACAAAGGTGATGATGGTACAATTTGGCTATTGGCCAAGGCTTATGTTGTTGTAAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTGCATACTCATGCAGTGATGGAGCCATTTTCCATAGCAACACACAGACAACTCAGTGTGCTTCACCCTATTTATAAACTTCTTCATCCTCACTTTCGTGACACCATCAATATCAATGCACTTGCTAGGCAATCGCTGATTAATGCAGGCAGCATTATAGAGCAAACATTTTTGCCCGGGAAGTACTCTATGGAGATGTCTTCAGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCATTACCAACTGATCTCATCAAGAGAGGATTGGCAGTTAAGGATCACACTTCCCCACATGGCCTTCGCCTTATGATAAAGGACTATCCTTATGCTGTTGATGGATTAGAAATATGGGATGCTATTAAGACATGGGTCCAAGAGTATGTCAACTTGTATTACTCTAATGATAAGGCAGTTGAAGAAGATACTGAACTGCAAGCATGGTGGAAGGAAGTTGTGGAGAAGGGTCACGGTGACTTAAAAGATAACGAATGGCCTAAAATGAAGACATGTCAAGAGCTTATAGACTCTTGCACTATAATTATATGGATTGGTTCAGCTCTACATGCAGCTGTTAATTTTGGACAGTACCCTTATGGAGGCTATATCCTAAACCGTCCAACTCAAAGCAGAAGATTGCTCCCAGAACCAAAAACCAAAGAGTATGATGAGATGGTCAAGAATCCTCAAGAGGCTTTTTTGAGAACAATTACACCAAAGTTCCAGACAGTTATTGATCTTACAGTGATGGAGATATTGTCAAGCCATTCCTCTGATGAGATCTACCTTGGACAGAGGGACACTCCAAATTGGACCTCTGATCAGAATGCAAAAGATGTATTTGAAACATTTACAAAAACACTTGCAGAGATTGAGAAAAAAATCTCAGAAAGGAACAACAACCAAGAGCTTAAAAACCGAACTGGGCCAGCCAAATTTCCCTACACTGTGCTTCTTCCTACCAGTGAACCAGGGTTGACTTTTAGGGGAATCCCTAATAGTGTCTCTATCTAA 2586 0.4037 MSSMMVKGKVVLIRKYVLQTISNAKELVGNGFNLIGSSVEYDITKSVFFNLISRTKSSKDNYSKDGKEACLENNASVLRSLGGKEEEFDIYFEWDATEMGIPGAFYVKNHMKDEFFLVSMTLEYPLPTCDRHKDKNSIIHFLCNSWVHNHGCYKTHHRIFFDNNPYLPGNQTPEALRKYREEELDNLRGDGTGERKEWDRIYDYDVYNDLGYLDSDEKDDHPILGGTLYPYPRRVRTGRKLLNDKNINGGKYEKPADNVIYVPRDENFSLEKTTDFLEFGKKSLSGKVEPLLLSLYLKLTPNEFNGFEEVQRLYDQEGGIKLPISTTMGTENVLKFPTPHVIQASTFAWMTDEEFAREMIAGVNPNVIRLLKREDLAPRRRLDCKCNHSTITKEKLEINMGGVTVDEAFCNKRLFILDYYDAFMPYLRKINELDSAKAYATRTFLFLKDDGTLKPLAIELSKPHQCVYVLPHPPHMRPSPFLHYYFPSQVVLPADKGDDGTIWLLAKAYVVVNDTNYHQLISHWLHTHAVMEPFSIATHRQLSVLHPIYKLLHPHFRDTININALARQSLINAGSIIEQTFLPGKYSMEMSSAVYKNWVFTDQALPTDLIKRGLAVKDHTSPHGLRLMIKDYPYAVDGLEIWDAIKTWVQEYVNLYYSNDKAVEEDTELQAWWKEVVEKGHGDLKDNEWPKMKTCQELIDSCTIIIWIGSALHAAVNFGQYPYGGYILNRPTQSRRLLPEPKTKEYDEMVKNPQEAFLRTITPKFQTVIDLTVMEILSSHSSDEIYLGQRDTPNWTSDQNAKDVFETFTKTLAEIEKKISERNNNQELKNRTGPAKFPYTVLLPTSEPGLTFRGIPNSVSI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1569 861 SUPERFAMILY Lipoxigenase 170 861 IPR036226 -
Gso8g1569 861 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Gso8g1569 861 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Gso8g1569 861 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Gso8g1569 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 166 IPR036392 GO:0005515
Gso8g1569 861 Gene3D PLAT/LH2 domain 1 166 - -
Gso8g1569 861 Gene3D - 347 471 - -
Gso8g1569 861 PANTHER LIPOXYGENASE 6 861 IPR000907 GO:0016702|GO:0046872
Gso8g1569 861 SMART LH2_4 4 163 IPR001024 GO:0005515
Gso8g1569 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Gso8g1569 861 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 334 350 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 439 463 IPR001246 GO:0016491
Gso8g1569 861 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Gso8g1569 861 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 6 861 - -
Gso8g1569 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 861 IPR013819 GO:0016702|GO:0046872
Gso8g1569 861 Gene3D - 272 346 IPR027433 -
Gso8g1569 861 Gene3D - 496 860 - -
Gso8g1569 861 Pfam Lipoxygenase 176 844 IPR013819 GO:0016702|GO:0046872
Gso8g1569 861 Gene3D - 167 270 - -
Gso8g1569 861 Pfam PLAT/LH2 domain 62 161 IPR001024 GO:0005515
Gso8g1569 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1569 Gso-Chr8 15278061 15283229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1569 2 861 Acyl Lipid Metabolism Gene Families AT1G55020 49.321 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1569 K15718 - gmx:100802685 1766.51