Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1088 ATGCCAAGTATAGTTATTACATGCAGAAGTGTTGTTGATGGGTGCTACCTCACACTACTCATAATCTCATGCCTCGGTTTGATCGTCACACTCAACCGCTTCATCTCCTTCTTCACATGGATCTTCCGAACCTGTTTCCGATCCGAGAAGAATCTCCTCCGAAGCTACGGTTCGTGGGCTCTGGTCACCGGAGCCACCAACGGCATCGGAAAAGCCTTCGCTCACCAACTAGCGCAGAGAGGACTCAACCTTATTCTCGTGAGTAGAAGCTTCCAGAAGCTCAAAACCGTTGCCGGTGAAATAAAAGCAAAACACCCCGGCACGCGCGTGAAGATCGTTGAGATGGACTTCGCCGGCGACCTGACGGAGGGTCTCCGGCGCGTGGAGGAGGCGAGTGAGGGTTTGGATGTTGGCGTCTTGATCAACAACGTGGGGATAACGTATCCGAGGGCGATGTTCTTTCATGAGGTGGAGGAGAAAGTTTGGAGGAACATTGTTAGAGTGAACATCGAAGGAACCACGAGAGTAACGAAAATTGTTTTACGTGGGATGTTACAAAGGAGAAAGGGTGCGATTGTTAACATTGGATCCGGTGCTTCTGTGGTTGTGCCTTCTCATCCTCTCTTTACCATCTATGCTGCTTCAAAGGCTTACGTGGACCAGTTATCAAGATCTCTGTACGTGGAGTATGGACAATACGGGATTCATGTGCAATGTCAGGTACCACTATACGTTGCAACGAGTATGGTATCAAGGGTGGCATGTATTGAGAGAGATTCTTTGTTCATACCAACAGCTGAGGCTTATGCTAGAGCTGCAATTGGTGAAATTGGGTACAGACCAAAGTGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTTGCAAACTTAATCCCTGATCCACTACTTGATGCTTGGCGCTTCTCCATTGCTATGCGCCGCAGGAATCAAAACGGAGAGTCAAGTCAAAATTAA 978 0.4826 MPSIVITCRSVVDGCYLTLLIISCLGLIVTLNRFISFFTWIFRTCFRSEKNLLRSYGSWALVTGATNGIGKAFAHQLAQRGLNLILVSRSFQKLKTVAGEIKAKHPGTRVKIVEMDFAGDLTEGLRRVEEASEGLDVGVLINNVGITYPRAMFFHEVEEKVWRNIVRVNIEGTTRVTKIVLRGMLQRRKGAIVNIGSGASVVVPSHPLFTIYAASKAYVDQLSRSLYVEYGQYGIHVQCQVPLYVATSMVSRVACIERDSLFIPTAEAYARAAIGEIGYRPKCTPYWAHSIQWCFANLIPDPLLDAWRFSIAMRRRNQNGESSQN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1088 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 272 IPR036291 -
Gso8g1088 325 PIRSF 11-beta-HSD1 8 321 - -
Gso8g1088 325 PRINTS Glucose/ribitol dehydrogenase family signature 59 76 IPR002347 -
Gso8g1088 325 PRINTS Glucose/ribitol dehydrogenase family signature 135 146 IPR002347 -
Gso8g1088 325 PRINTS Glucose/ribitol dehydrogenase family signature 184 200 IPR002347 -
Gso8g1088 325 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Gso8g1088 325 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Gso8g1088 325 PANTHER RH59310P 18 319 - -
Gso8g1088 325 Gene3D - 51 278 - -
Gso8g1088 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 146 IPR002347 -
Gso8g1088 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 190 198 IPR002347 -
Gso8g1088 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Gso8g1088 325 CDD 17beta-HSD1_like_SDR_c 57 300 - -
Gso8g1088 325 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 18 319 - -
Gso8g1088 325 Pfam short chain dehydrogenase 59 252 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1088 Gso-Chr8 10061244 10064395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1088 34 317 Lipid Metabolism Gene Families AT1G24470 58.451 1.12e-122 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1088 K10251 - mnt:21410235 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1088 8 10061244 10064395 Gso18g0102 18 836244 839262 PCT