Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0849 ATGGGTTCTCTGGCCCGACCAAACTCACTCTTTTTTCGAACCAAAGGACCCGGACGTGCCCGGAAAGTACCAAGTGAGGTTTTGGCTTTTCAGCGTTCCAATTCAAATGGTTCATTTCCCTCATCAGAACAGCTTGAACTTGAAGCAAGCCAGAAGAACATGGAAGCACCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTGGGTAAAGCCCCATGCAAGGTGTTGGTCAACTATGCCAGGTCATCCATGCAAGCTGAGGAGGTTTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTCTTACCTTCGAGGGAGATGTTTCAAATGAGGCCGATGTGGAATCTATGATTAGAACTGCAGTTGATGCTTGGGGAACTGTTGATGTATTGGTAAACAATGCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGAAGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCATGCAGGCAGCAGCAAAGATTATGACGATGAAAAAGAAGGGAAGGATAATCAATATTACATCAGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACTGCCAATCTACGACCAGGCATTGAGAAAAAAAGATTGGAATTAATCCCCTTAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCCAATTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTTTGGCAATGTGA 900 0.45 MGSLARPNSLFFRTKGPGRARKVPSEVLAFQRSNSNGSFPSSEQLELEASQKNMEAPVVVVTGASRGIGRAIALSLGKAPCKVLVNYARSSMQAEEVSNLIEAFGGQALTFEGDVSNEADVESMIRTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCMQAAAKIMTMKKKGRIINITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTANLRPGIEKKRLELIPLGRLGQPEEVAGLVEFLALNPAANYITGQVFTIDGGLAM* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0849 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 298 IPR036291 -
Gso8g0849 299 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 193 221 IPR020904 GO:0016491
Gso8g0849 299 CDD BKR_SDR_c 58 297 - -
Gso8g0849 299 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 41 299 - -
Gso8g0849 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Gso8g0849 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Gso8g0849 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gso8g0849 299 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 57 237 - -
Gso8g0849 299 Pfam Enoyl-(Acyl carrier protein) reductase 63 297 - -
Gso8g0849 299 Gene3D - 56 298 - -
Gso8g0849 299 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 41 299 - -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Gso8g0849 299 PRINTS Glucose/ribitol dehydrogenase family signature 260 280 IPR002347 -
Gso8g0849 299 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 59 297 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0849 Gso-Chr8 7879991 7883093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0849 30 299 Acyl Lipid Metabolism Gene Families AT1G24360 68.519 4.20e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0849 K00059 - gmx:100811718 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0080 18 676650 680680 Gso8g0849 8 7879991 7883093 PCT
Gso13g1541 13 30812559 30816606 Gso8g0849 8 7879991 7883093 PCT
Gso8g0849 8 7879991 7883093 Gso18g0080 18 676650 680680 PCT
Gso8g0849 8 7879991 7883093 Gso13g1541 13 30812559 30816606 PCT