Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0070 ATGGCTAGGGTTTTAGCTCAGTCTACTGGTATGCCTGGCCTACTGAGTGGGCGAAGGCATGGGCCGCATAAAGGATCAGGAAAAACGAAAAGATCTGTTAAAATGATGAGTACCTTACGAATTCCTGCTTTAAGAATGTCGAGTTTCTCTGGATTACGGACACTTAATCCTTTGGATTCTGTGTCGAGACCACGACACACTTTTCCGTTGACTACAACTTCTAGGCGCGAGAGGGCTAAAAGATGTGTACCTAAAGCTATGTTTGAGCGTTTCACAGAGAAGGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGACTGGGGCACAATTTTGTTGGAACGGAACAGATTCTATTGGGTCTCATTGGCGAAGGAACCGGCATTGCTGCTAAGGTTCTGAAGTCAATGGGAATTAACCTCAAGGATGCTCGGGTTGAAGTGGAGAAAATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCGTTTACTTCCCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTCCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGCTGCTGATCCAAACAATATTCGCGCTCAGGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTAGTAATAACAACAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCGGAAGAGGGGAAATTGGATCCTGTCATGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATTTTGGGTCGTCGTACAAAAAATAATCCTTGTCTTATTGGGGAACCTGGGGTCGGGAAGACAGCTATTGCTGAAGGTCTTGCCCAAAGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTGCTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAAGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTCTTTATTGATGAAGTGCACACTCTAATTGGAGCTGGAGCAGCTGAGGGAGCAATTGATGCTGCAAATATATTAAAACCAGCTCTTGCCAGAGGTGAACTGCAGTGTATAGGAGCCACAACACTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCTTTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTCAATGAAACCATACAAATACTGAAAGGACTCAGAGAACGCTATGAAATTCACCACAAGCTTCATTACACAGATGATGCTCTTGTAGCTGCTGCCCAGCTATCACACCAATATATTAGTGATCGATTTTTGCCAGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCTCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTTAGACAGATTGTAAAGGAGAAAGAAGAATCTGTTCGCAATCAAGACTTTGAAAAGGCCGGAGAGCTAAGAGATAGAGAAATGGATCTTAAGGCGCAGATATCTGCACTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAAAGTGAGGCAGGAGATGAAGGTCCCATGGTCACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTGGAGAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAAATGGAAGAGACTTTACACAAGCGAGTCATAGGTCAGGATGAAGCAGTGAAAGCCATAAGCAGGGCCATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCACACAGTCTCGAAACTTATTGGTTCACCTCCTGGATACGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGCCGTCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGATTAACAGACAGCAAAGGAAGAACTGTGGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAACCGAATCAAGAGCTTGGTGACTGAGGAACTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTGGAGGTTAAGGAGATAGCAGACATAATGCTGAAGGAGGTGTTCCAGAGACTGAAAGCTAAAGAGATTGATCTTTCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGACGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCAACTTTTGGAGGATAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAGGAGGGTGACTCAGTTATAGTTGATTCTGATTCTGACGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGATTCACTAGAAGATGTCTTAGTTAGTTGA 2760 0.4449 MARVLAQSTGMPGLLSGRRHGPHKGSGKTKRSVKMMSTLRIPALRMSSFSGLRTLNPLDSVSRPRHTFPLTTTSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTSRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLAADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVMGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVNETIQILKGLRERYEIHHKLHYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEESVRNQDFEKAGELRDREMDLKAQISALIEKGKEMSKAESEAGDEGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKAKEIDLSVTERFRERVVDEGYNPSYGARPLRRAIMQLLEDSMAEKMLAREIKEGDSVIVDSDSDGNVIVLNGSSGAPDSLEDVLVS* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0070 919 Gene3D - 242 432 IPR027417 -
Gso8g0070 919 Gene3D UVR domain 498 562 - -
Gso8g0070 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 526 IPR027417 -
Gso8g0070 919 Coils Coil 343 363 - -
Gso8g0070 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Gso8g0070 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 681 699 IPR001270 GO:0005524
Gso8g0070 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 710 728 IPR001270 GO:0005524
Gso8g0070 919 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 757 IPR001270 GO:0005524
Gso8g0070 919 Pfam AAA lid domain 433 533 IPR041546 -
Gso8g0070 919 ProSiteProfiles UVR domain profile. 506 541 IPR001943 GO:0005515
Gso8g0070 919 MobiDBLite consensus disorder prediction 1 33 - -
Gso8g0070 919 CDD AAA 606 754 - -
Gso8g0070 919 CDD AAA 273 424 - -
Gso8g0070 919 Pfam ATPase family associated with various cellular activities (AAA) 294 410 IPR003959 GO:0005524|GO:0016887
Gso8g0070 919 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 72 911 - -
Gso8g0070 919 ProSitePatterns Chaperonins clpA/B signature 2. 666 684 IPR028299 -
Gso8g0070 919 Gene3D - 87 234 IPR036628 -
Gso8g0070 919 Gene3D - 584 810 IPR027417 -
Gso8g0070 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 897 IPR027417 -
Gso8g0070 919 SUPERFAMILY Double Clp-N motif 89 223 IPR036628 -
Gso8g0070 919 Pfam AAA domain (Cdc48 subfamily) 631 805 IPR003959 GO:0005524|GO:0016887
Gso8g0070 919 Gene3D - 435 578 - -
Gso8g0070 919 Gene3D - 812 909 - -
Gso8g0070 919 Pfam Clp amino terminal domain, pathogenicity island component 178 229 IPR004176 -
Gso8g0070 919 Pfam Clp amino terminal domain, pathogenicity island component 102 154 IPR004176 -
Gso8g0070 919 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Gso8g0070 919 SMART ClpB_D2_small_2 812 902 IPR019489 -
Gso8g0070 919 Coils Coil 502 522 - -
Gso8g0070 919 PANTHER ATP-DEPENDENT CLP PROTEASE 72 911 - -
Gso8g0070 919 SMART AAA_5 289 429 IPR003593 -
Gso8g0070 919 SMART AAA_5 632 813 IPR003593 -
Gso8g0070 919 ProSiteProfiles Clp repeat (R) domain profile. 88 230 IPR004176 -
Gso8g0070 919 Pfam C-terminal, D2-small domain, of ClpB protein 812 892 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0070 Gso-Chr8 676381 683992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0070 K03696 - gmx:100795228 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1712 5 40391538 40397564 Gso8g0070 8 676381 683992 GST
Gso8g0070 8 676381 683992 Gso4g1690 4 46884453 46891563 PCT
Gso8g0070 8 676381 683992 Gso6g1396 6 13767507 13774253 PCT
Gso4g1690 4 46884453 46891563 Gso8g0070 8 676381 683992 PCT
Gso6g1396 6 13767507 13774253 Gso8g0070 8 676381 683992 PCT