Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1057 ATGCAAAGCCTAGACACTTGTGTTTTCATTCTTGCCTTTATTATTTCACCATATTTATGTCATAGTGTTGGTACCAACACAATTTATAATGTGATAAACTATGGTGCTAAGGGAGATGGCAGATCAGATGATTCACAAGCCTTTTTAAGAGCATGGCAAAGCACGTGTGGAGCACAAGGAGCAGCAACTCTACTTATACCACCAAACAGAGTATTCTTGGTGTCAAGCTTAATACTAAAGGGTCCTTGCTCCGCCGCAATTCAAATTCAGCTTCGAGGGAAAATAGTTGCACCTGCGAAAGATGCTTGGGTAGGAGGATATAAGTATACTTGGATTTTGATCTCAAACATAAACGGTCTTACAATTGAAGGAAATGGAGGATTACTTGATGGCGATGGTTCCACATGGTGGGCATGCAAAAATTGTCCACGACCAGCGGTCCTTTCTTTCCAATCATGCAATCGTCTTAGTGTTAGTTACTTGAACATCATTAATAGTCCAAGAGCTCACATAGGCATAAATCAATGTCAGGGAGCCATATTCTCTAATATTAATATTCATGCTCCTGGTGATGATTGTATTGCCATCACTGGTAGCTCCTCTTACATCAATGTTACTGGGATTGATTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGTAGAAATTATGATACAATCCAAGAAGTTCATGTACAAAACTGCAAGTTCACGAGCACTACAAATGGAGCAAGAATCAAGACATTTGCAGGTGGATCAGGTTATGCAAAAAGAATAACTTTTGAGGAAATCACATTAATACAGGCTCGCAACCCAATAATTATAGACCAATTCTATGTTGGTGAGGATGATTTAACGAATGGAGAAGTCCAAGTGAGTGACGTAACATTCCGTGGATTTCGAGGAACATGTACATATGACCAAGCTATTGACTTAAGTTGCGGCCCATTAGGTTGTTTCAACATTATATTGGATCAAAATAACATTGTCTCTTCTCAACCAGGAAAGCAGGCTTATTGTTCTTGTAAGAATGCCCATGGAAGTGTTAGATCCAGTGTTCCAAATTGTCCTTGCTTAGTACCATGA 1089 0.3994 MQSLDTCVFILAFIISPYLCHSVGTNTIYNVINYGAKGDGRSDDSQAFLRAWQSTCGAQGAATLLIPPNRVFLVSSLILKGPCSAAIQIQLRGKIVAPAKDAWVGGYKYTWILISNINGLTIEGNGGLLDGDGSTWWACKNCPRPAVLSFQSCNRLSVSYLNIINSPRAHIGINQCQGAIFSNINIHAPGDDCIAITGSSSYINVTGIDCGPGHGISIGSLGRNYDTIQEVHVQNCKFTSTTNGARIKTFAGGSGYAKRITFEEITLIQARNPIIIDQFYVGEDDLTNGEVQVSDVTFRGFRGTCTYDQAIDLSCGPLGCFNIILDQNNIVSSQPGKQAYCSCKNAHGSVRSSVPNCPCLVP* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1057 362 ProSitePatterns Polygalacturonase active site. 207 220 IPR000743 GO:0004650|GO:0005975
Gso7g1057 362 SMART pbh1 228 249 IPR006626 -
Gso7g1057 362 SMART pbh1 257 278 IPR006626 -
Gso7g1057 362 SMART pbh1 176 198 IPR006626 -
Gso7g1057 362 SMART pbh1 288 315 IPR006626 -
Gso7g1057 362 SUPERFAMILY Pectin lyase-like 20 360 IPR011050 -
Gso7g1057 362 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 189 360 - -
Gso7g1057 362 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 190 - -
Gso7g1057 362 Gene3D - 20 357 IPR012334 -
Gso7g1057 362 PANTHER - 1 190 - -
Gso7g1057 362 PANTHER - 189 360 - -
Gso7g1057 362 Pfam Glycosyl hydrolases family 28 190 347 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1057 Gso-Chr7 14746575 14753569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1057 24 357 Glycoside Hydrolase AT5G17200 41.282 5.29e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1057 K01184 - gmx:100801217 737.643