Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0862 ATGTCATCTTCTAAGCTCACACTGTACGGAATCGGAACCGCACTCTTCCGCACCCGTAGAACTGCACCCGTAACTGTAACTCCCCACTCTCCCTTTCTCTTCTTCAAACCCATTCCCTTCCCGCCGTGCTTCCTCCGCCCCGATTCCTCTTCCTCCTCCTCCTTCTCCGCCGCCGCCGCCGCCGCAGAAACCCTACCCTCCGTCGACCACCCCTGGCCGGAATGGGTCTCCTTCGTCGACCGCTTGAACACCAAAGGCTACCTCCCCAAAACCTCCTCTTCCGACGACACCGTAAGCCTTTACGCCAACATGAACTCTCTCAAGGACGCTTGTCTCAGCTTCGCGCGTGACCGTTACGACCTTTTCAATTTGCTGCCTACAAATGATATCCAAGCAGTGGTTGAGGGTGGGTGCCCTAATCTTCTCCGTAAAGCTGTTAATTCAGCTAAGAGGCTGAGAGCACACCTGCAATTAGATGAAGGGGATGTTTGTGGTGCTTGCTATCTACGAAGCTCTTGTGATAGAGCTTATGTGATTCTGAAGGATTTTGAAACTGATGCCCGAACTGTTGATATAGTTCGAATACTTTTGTTCTACGCACTAGATCCACTTGTGCTTTCTGGAGGAGACAAACCACCGGGCCGGGAAGTTATTGAATCATCTGTCAGAAAACTTCTCTCTCAGCTAATTGAGTTGAGTGAGTCCCCTGCTCCTGCCCCTGCTCCTGCTCGTTCAAAGCCTACTGCACAGGATGGTGTGGTAGAAGGCCAATCTCTAAGTGTTACGACTAATCAATTGTTTAAAGATGTTGAGATGAAGAAAGGTGACTGGATGTGTCCAAAATGCAATTTCATGAACTTTTCTAGAAATACACAATGCCTGAATTGTAAGGAAGACAAGCCTAAGGATATTAACCCGTTTACTGTTCAAATGAAGCCAGGAGATTGGACCTGTCCTGAATGCAATTATTTAAATTTTGCCAGAAACAGACTATGTCTAGAATGCAAAATAGAGGGGCCGGCGAAGGAAGCTAATACCATTGAAGTTGAAAGGAAAAAAGGAGATTGGACTTGCCCACAATGTGGGTTCATGAATTATGCTAGGAACACGAAATGTTTGCGTTGTCCTGAGACAAGGCCTAAGAAACATCCTGGGGACTGGAATTGTCCCGGGTGTGGGTTCATGAATTTTGCTAGTAAAATGAAGTGTTTGCATTGTCAAGAGCCAAACCCAAGTTCCAAGAAATATAGTGGGGATTGGAGTTGCCCCAAATGCGATTTCTACAATTATGCAAGAAATATGGCTTGCCTGAAGTGCAATGCTGAACGCCCTAAAGAACAACCAACCGTTGACTATGAGGACCATGAATGGAGACGATCAAACTGA 1386 0.4704 MSSSKLTLYGIGTALFRTRRTAPVTVTPHSPFLFFKPIPFPPCFLRPDSSSSSSFSAAAAAAETLPSVDHPWPEWVSFVDRLNTKGYLPKTSSSDDTVSLYANMNSLKDACLSFARDRYDLFNLLPTNDIQAVVEGGCPNLLRKAVNSAKRLRAHLQLDEGDVCGACYLRSSCDRAYVILKDFETDARTVDIVRILLFYALDPLVLSGGDKPPGREVIESSVRKLLSQLIELSESPAPAPAPARSKPTAQDGVVEGQSLSVTTNQLFKDVEMKKGDWMCPKCNFMNFSRNTQCLNCKEDKPKDINPFTVQMKPGDWTCPECNYLNFARNRLCLECKIEGPAKEANTIEVERKKGDWTCPQCGFMNYARNTKCLRCPETRPKKHPGDWNCPGCGFMNFASKMKCLHCQEPNPSSKKYSGDWSCPKCDFYNYARNMACLKCNAERPKEQPTVDYEDHEWRRSN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0862 461 SUPERFAMILY Ran binding protein zinc finger-like 383 413 IPR036443 -
Gso7g0862 461 Gene3D - 265 303 - -
Gso7g0862 461 Gene3D - 305 341 - -
Gso7g0862 461 Gene3D - 414 446 - -
Gso7g0862 461 Gene3D - 343 382 - -
Gso7g0862 461 Gene3D - 383 413 - -
Gso7g0862 461 SMART zf_4 314 338 IPR001876 -
Gso7g0862 461 SMART zf_4 354 378 IPR001876 -
Gso7g0862 461 SMART zf_4 385 409 IPR001876 -
Gso7g0862 461 SMART zf_4 275 299 IPR001876 -
Gso7g0862 461 SMART zf_4 418 442 IPR001876 -
Gso7g0862 461 Pfam Zn-finger in Ran binding protein and others 273 301 IPR001876 -
Gso7g0862 461 Pfam Zn-finger in Ran binding protein and others 385 411 IPR001876 -
Gso7g0862 461 Pfam Zn-finger in Ran binding protein and others 312 336 IPR001876 -
Gso7g0862 461 Pfam Zn-finger in Ran binding protein and others 352 375 IPR001876 -
Gso7g0862 461 Pfam Zn-finger in Ran binding protein and others 417 444 IPR001876 -
Gso7g0862 461 PANTHER ZINC FINGER PROTEIN 383 457 - -
Gso7g0862 461 PANTHER ZINC FINGER PROTEIN 11 343 - -
Gso7g0862 461 PANTHER ZINC FINGER PROTEIN 338 382 - -
Gso7g0862 461 SUPERFAMILY Ran binding protein zinc finger-like 305 337 IPR036443 -
Gso7g0862 461 ProSitePatterns Zinc finger RanBP2-type signature. 277 296 IPR001876 -
Gso7g0862 461 ProSiteProfiles Zinc finger RanBP2 type profile. 312 341 IPR001876 -
Gso7g0862 461 ProSiteProfiles Zinc finger RanBP2 type profile. 273 302 IPR001876 -
Gso7g0862 461 SUPERFAMILY Ran binding protein zinc finger-like 345 382 IPR036443 -
Gso7g0862 461 PANTHER ASPARAGINE-RICH PROTEIN 338 382 - -
Gso7g0862 461 PANTHER ASPARAGINE-RICH PROTEIN 11 343 - -
Gso7g0862 461 PANTHER ASPARAGINE-RICH PROTEIN 383 457 - -
Gso7g0862 461 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Gso7g0862 461 SUPERFAMILY Ran binding protein zinc finger-like 269 303 IPR036443 -
Gso7g0862 461 SUPERFAMILY Ran binding protein zinc finger-like 416 446 IPR036443 -
Gso7g0862 461 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
Gso7g0862 461 ProSitePatterns Zinc finger RanBP2-type signature. 356 375 IPR001876 -
Gso7g0862 461 ProSiteProfiles Zinc finger RanBP2 type profile. 383 412 IPR001876 -
Gso7g0862 461 MobiDBLite consensus disorder prediction 235 255 - -
Gso7g0862 461 ProSiteProfiles Zinc finger RanBP2 type profile. 352 381 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0862 Gso-Chr7 9817589 9823084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0862 418 447 EF-hand Containing Proteins AT1G55040 66.667 4.64e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0862 - - gmx:100819532 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0862 7 9817589 9823084 Gso7g0862 7 9817589 9823084 ECH
Gso7g0862 7 9817589 9823084 Gso9g1453 9 38605485 38608121 GST