Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0800 ATGAGGTCTTCTTCTTCGGACAGGAACAGGATCAACATCGCTGCCAGTGCTCAGAAAGTCGATGTCGATAACCGAATCTCTCTCCGATTCTACTACCGCATCGCCGATAACATCCTCCGACAGGCCGATATCTTTCGTGCAGAGAAGAATATTATTGACCTATATGTCATGCTTTTAAGATTTTCTAGTTTGGTGTCGGAGACAATACCACGTCACCGAGACTATAGATCATCTCCACCAAGGCAGAAAGAATCATTGAAAAAGAAATTGTTAATTTCTTTGAATGAACTGGAGAACTTGAAACCAGTGGTCCAACAGAAGATCAATGAGCTTAACAGCAAACTTGCATACCAACAAAATGGACAGGGAAAATTTAGTTCAAATAATTCACTGGATTTTTCTCCCGTGAAAAAGCAAACTTCGGCTAGTTATGGCCTAATAAAGGCTGTCAGGCCTACTGCTGGGGAGTTTGTTTACCAAGGATCAAGGAGCCAACCTTTCTCTTATGTCAGGCCTGTGGAAGAGCATGCACGAAGACTATCTCTAACTCTTCCACCTCCAAAGGAAGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAACGGGCTAAAAGGGCAGTGGAGACCACCTATCATTGATAAAGGGATCAAGTATCCAAGCAACATAGATCTGTCTCCTGTTGAATTACCAAGCCTACAACATTCCTTGGAAGATGAATCTCTGAAAAAGAAGGATAACAGCATTGCAGAACACCATAAATCAGAGTTAGATTCAATTCTAACCCAAAGTGAGGACTGCCAGCCCCATCCCCAACCTCAGCCTCAGCATGATCAGGAGCCTCCTTCTCTTATTTCTTTTGAGACAACTGAAACCTCTGCTCAAATAGAAGTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTACAAGATTTGGTCCCTGCAGTGTCACCTTGTGTTAATGAGGCAGGATGTAAGACAGAGATTCCATCATCAGATAGTTCTGTTCATGTCGAGGCTCCAATGCAATTGCACATTTCAACTGCTTTAATGGAGAGTTTTATGAAGCTTGCCAAGTCAAATACAAAAAAAAATTTAGAGACTTGTGGTGTCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACTGCCCTTATAATCCCAAAGCAGGAGTCAACATCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAAGATAAACGGTCTCTTTTTCCCCTTGGGTGGATCCATACACATCCTACACAATCTTGTTTTATGTCATCAATTGATCTGCACACCCATTACTCCTATCAGATTATGCTGCCAGAATCTGTTGCAATAGTTATGGCGCCAAGAGATAGTTCGAGAAACCATGGCATTTTTCGGTTGACAGCCCCTGGTGGAATGTCTGTGATTAAACAATGTGATCAACGTGGCTTTCATCCACATAGTCAGCCTCCAGATGGTGGTCCGATTTACAAGACATGTACAGATGTATACATGAACCCAGATTTAAAATTTGAGGTAATTGATCTTCGATGA 1560 0.4173 MRSSSSDRNRINIAASAQKVDVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVSETIPRHRDYRSSPPRQKESLKKKLLISLNELENLKPVVQQKINELNSKLAYQQNGQGKFSSNNSLDFSPVKKQTSASYGLIKAVRPTAGEFVYQGSRSQPFSYVRPVEEHARRLSLTLPPPKEETLSRHSILGPNGLKGQWRPPIIDKGIKYPSNIDLSPVELPSLQHSLEDESLKKKDNSIAEHHKSELDSILTQSEDCQPHPQPQPQHDQEPPSLISFETTETSAQIEVIRQPSPPPVLAEVQDLVPAVSPCVNEAGCKTEIPSSDSSVHVEAPMQLHISTALMESFMKLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPRDSSRNHGIFRLTAPGGMSVIKQCDQRGFHPHSQPPDGGPIYKTCTDVYMNPDLKFEVIDLR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0800 519 CDD MPN_AMSH_like 344 519 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Gso7g0800 519 SMART pad1_6 344 472 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso7g0800 519 MobiDBLite consensus disorder prediction 184 204 - -
Gso7g0800 519 Pfam USP8 dimerisation domain 13 107 IPR015063 -
Gso7g0800 519 MobiDBLite consensus disorder prediction 263 282 - -
Gso7g0800 519 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 519 - -
Gso7g0800 519 Coils Coil 94 114 - -
Gso7g0800 519 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 344 448 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso7g0800 519 Gene3D - 3 130 - -
Gso7g0800 519 ProSiteProfiles MPN domain profile. 345 475 IPR037518 -
Gso7g0800 519 SUPERFAMILY JAB1/MPN domain 343 475 - -
Gso7g0800 519 Gene3D Cytidine Deaminase, domain 2 326 519 - -
Gso7g0800 519 PANTHER AMSH-LIKE PROTEASE 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0800 Gso-Chr7 8797807 8804578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0800 K11866 - gmx:100804754 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0800 7 8797807 8804578 Gso7g0800 7 8797807 8804578 ECH