Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0599 ATGCTCTGCAAATTCCATTTCAAAAAGCAGCTCCGTTTCCCTCCAATCCCTTATTCATTTGTCACTCAATGCACCCATTCATGGAGCATAATCAGAGCTTCTGTGCCAGTTCCTGATGAAACCCATTTCAGGGACCCTCACACTGTTCATTTGTTTTGTGCCAATGCCCTCAAAGTTTCTGCCAAAAGGGCCCTTCTTCCTGAAGGGAAACAGCTACATGCCCATTTGATAAAGTTTGGATTTTGCCATGTTCTGTCCCTGCAAAATCAGATTTTGGGTGTTTATCTTAAGTGTACGGAAGCTGATGATGCGGAGAAACTGTTTGAGGAATTGTCTGTGAGAAATGTTGTGTCATGGAACATTCTGATTCGAGGTATTGTTGGATGTGGTGATGCAAATGAAAATGACTCGAACCAACAACAGTGCTTTTCTTATTTTAAAAGGATGTTGTTGGAACTGGTGGTTCCAGATAGTACAACTTTTAATGGTCTCTTTGGTGTTTGTGTCAAGTTTCATGATATTGACATGGGCTTCCAGTTGCATTGTTTTGCAGTGAAACTTGGATTAGATTTGGATTGTTTTGTGGGAAGTGTTCTTGTTGATTTATATGCACAATGTGGTTTAGTTGAGAATGCAAGGAGGGTTTTTCTTGTTGTTCAACATAGAGATTTGGTTGTGTGGAATGTGATGATTTCTTGCTATGCCTTGAATTGTTTACCAGAAGAGGCTTTTGTCATGTTCAACTTGATGCGATGGGATGGTGCAAATGGGGATGAGTTCACTTTTAGCAACCTTCTTAGTATATGTGATTCTTTGGAATATTATGATTTTGGAAAGCAGGTTCACGGTCATATTCTGAGACTGTCATTTGATTCAGATGTTTTAGTGGCTAGTGCATTGATCAACATGTATGCAAAAAATGAAAATATAGTGGATGCACACAGACTATTTGATAATATGGTGATTCGAAATGTTGTGGCATGGAACACCATTATTGTTGGCTATGGGAATCGTAGAGAAGGGAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCGTGAAGGGTTTTCCCCTGATGAACTGACTATTTCAAGCACTATTAGTTTATGTGGCTATGTTTCTGCCATTACTGAAACAATGCAAGCTCATGCCTTTGCTGTCAAGTCATCATTTCAAGAATTTTTATCTGTTGCTAATTCTCTGATTAGTGCGTACTCCAAGTGTGGTAGCATTACTAGTGCATGTAAATGCTTCAGATTAACTAGAGAACCTGATCTTGTTTCGTGGACTTCATTGATAAATGCGTATGCATTCCATGGTCTTGCCAAAGAAGCAACTGAAGTGTTTGAGAAGATGCTATCTTGTGGAATAATTCCGGATCAAATTTCCTTTCTTGGTGTTCTCTCTGCCTGTTCTCATTGTGGCCTTGTGACTAAGGGACTTCACTACTTTAACTTAATGACCAGTGTGTATAAGATTGTTCCTGATTCAGGTCACTATACCTGCCTTGTTGACCTTCTTGGACGATACGGTCTTATAAATGAGGCTTTTGAATTCTTGAGGTCAATGCCAATGGAAGCTGAATCAAATACATTAGGAGCATTTGTTGCATCTTGCAATCTCCATGCAAATATAGGACTGGCTAAATGGGCCGCAGAGAAGCTCTTCACCATAGAGCCAGAGAAGAATGTAAACTATGCAGTCATGTCTAACATTTATGCTTCCCATAGACATTGGAGTGATGTGGAAAGAGTTCGTAGAATGATGGGAAACAAGTGTGATGCAAGAGTCCCAGGTTGCAGCTGGATAGAGATTACTAATCAAGTTCATTCATTCGTATCTAATGATAAGATACATCCTAAAGCTTTAGAAATGCATGCTACATTGAAAATGCTGCTTTGGCCAATGAAGGAAAAAAGTGGTATGAATTCGTGA 1935 0.3948 MLCKFHFKKQLRFPPIPYSFVTQCTHSWSIIRASVPVPDETHFRDPHTVHLFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITNQVHSFVSNDKIHPKALEMHATLKMLLWPMKEKSGMNS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0599 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Gso7g0599 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Gso7g0599 644 Gene3D Tetratricopeptide repeat domain 136 273 IPR011990 GO:0005515
Gso7g0599 644 Gene3D Tetratricopeptide repeat domain 394 632 IPR011990 GO:0005515
Gso7g0599 644 Gene3D Tetratricopeptide repeat domain 44 135 IPR011990 GO:0005515
Gso7g0599 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Gso7g0599 644 Pfam E motif 542 604 IPR046848 -
Gso7g0599 644 TIGRFAM PPR: pentatricopeptide repeat domain 298 326 IPR002885 -
Gso7g0599 644 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Gso7g0599 644 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Gso7g0599 644 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Gso7g0599 644 Pfam PPR repeat 499 524 IPR002885 -
Gso7g0599 644 Pfam PPR repeat 399 419 IPR002885 -
Gso7g0599 644 PANTHER OS07G0259400 PROTEIN 33 624 - -
Gso7g0599 644 PANTHER OS07G0578800 PROTEIN-RELATED 33 624 IPR045215 GO:0003723|GO:0009451
Gso7g0599 644 Pfam PPR repeat family 223 267 IPR002885 -
Gso7g0599 644 Pfam PPR repeat family 424 472 IPR002885 -
Gso7g0599 644 Pfam PPR repeat family 323 370 IPR002885 -
Gso7g0599 644 Gene3D Tetratricopeptide repeat domain 275 382 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0599 Gso-Chr7 6355111 6357579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0599 102 638 Glycoside Hydrolase AT3G49170 33.824 2.00e-104 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0599 - - gmx:100778378 1319.29