Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0343 ATGAAGATGATTCGCATTCTTTTCATCTTTGCTCTTCTATCCTTCACTTCCCATGCTTCTAATGTCAATGACTTCTGTGTGGCAGACCTGAAGGGTCCAGATAGCCCTACTGGCTATCACTGCAAGCCACCTAAAACAGTAACATCACATGACTTTGTGTTCCATTTAGGCCCTGGAAACACTTCAAACGTGTTCAAGTCCGCAATAACCTCTGCATTTGTCAAAGATTTTCCTGCTGTCAACGGTCTTAGCCTTTCTGTAGCACGCATTGACATAGCTCAAGGTGGAGTGGTTCCAATGCACACACATCCTGGTGCCAATGAAATAGTGATGATGGTGGCAGGTGAAATCAACGCTGGCTTTATAACAACCGATGCAGTTTATCAGAACACACTGAAACCAGGAGATGTTATGGTTATCCCACAAGCACAGATACATTTTCTTGTAAATTCTGGTAAGGGAAATGCCATTTTTTACGCTGCTTATAGTAGCGCAAACCCTCGAGTGCAACCAATTAGTATTCTGTTATTTGGCAACAACTTGTCTTCTAACACGGTTGCACAAACTACCATCATTGATGATTCCGAAGTGAGGAAATTGAAGGCCATTTTTGGTGGCAGTGGTTAG 627 0.429 MKMIRILFIFALLSFTSHASNVNDFCVADLKGPDSPTGYHCKPPKTVTSHDFVFHLGPGNTSNVFKSAITSAFVKDFPAVNGLSLSVARIDIAQGGVVPMHTHPGANEIVMMVAGEINAGFITTDAVYQNTLKPGDVMVIPQAQIHFLVNSGKGNAIFYAAYSSANPRVQPISILLFGNNLSSNTVAQTTIIDDSEVRKLKAIFGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0343 208 Gene3D Jelly Rolls 17 208 IPR014710 -
Gso7g0343 208 SMART Cupin_1_3 54 198 IPR006045 -
Gso7g0343 208 CDD cupin_OxOx 18 204 - -
Gso7g0343 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Gso7g0343 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Gso7g0343 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Gso7g0343 208 Pfam Cupin 58 188 IPR006045 -
Gso7g0343 208 PANTHER GERMIN-LIKE PROTEIN 8 204 - -
Gso7g0343 208 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Gso7g0343 208 SUPERFAMILY RmlC-like cupins 21 201 IPR011051 -
Gso7g0343 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0343 Gso-Chr7 3229289 3230137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0343 1 207 Miscellaneous Gene Families AT5G20630 51.659 9.86e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0343 - - gmx:100305768 413.69