Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0306 ATGTTGATTGGTTCTCTCTTAAACAGGCGTCCTAAGATCAAGGGGACTGTGGTGTTGATGACCAAGAATGTGTTCGACGTCAACGACTTCATGGCGACTACTAGGGGCGGACCAGCCGCTGTTGCCGGCGGCATCTTCGGTGCCGCCCAGGACATTGTTGGTGGAATAGTTGATGGTGCTACGGCCATCTTCAGCCGTAACATTGCCATACAGTTGATCAGTGCCACCAAGTCTGAGAATGCACTTGGACATGGGAAAGTTGGAAAGCTAACCTATTTGGAGAAACATCTTCCTTCATTACCAAACTTGGGAGATAGGCAGGATGCATTCGATGTTTATTTTGAATGGGATGAGAGTTTTGGAATTCCGGGAGCATTTTACATCAAAAACTATATGCAATCTGAGTTTTTCCTTGTGAGTTTCAAGCTTGAAGACGTTCCAAATCATGGAACCATTCTCTTTGCTTGCAACTCATGGGTTTACAACGCAAAATTGTACAAAAAAGATCGCATTTTCTTTGCTAATAAGGCATATCTTCCAAATGACACTCCAACTCCACTAGTAAAGTACAGAAAAGAAGAATTGGAAAATCTAAGAGGAGATGGAAGAGGGGAGCGCAAGGAACTTGATAGGATCTATGATTATGATGTCTATAATGATTTGGGCAACCCAGACGAGAATGACGATCTAGCTCGTCCTATTCTTGGCGGGTCTAGTAAGCATCCATACCCTCGCAGGGGAAGAACTGGTAGAAAACCAACAAAGAAAGACCCCAGATGTGAGAGACCAACCAGCGACACTTACATCCCGAGAGACGAAAATTTTGGTCACTTGAAGTCATCAGACTTCCTTACATATGCAATAAAATCCTTAACTCAAAACGTTTTACCTCAATTCAACACTGCATTTGGTTTCAATAATGAGTTTGATAGCTTCGAGGACGTGCGTTGTCTCTTTGATGGCGGAGTTTATCTCCCTACAGATGTACTCAGCAAAATTAGCCCCATACCGGTGCTCAAAGAAATCTTCCGCACTGATGGTGAGCAAGCCCTCAAGTTTCCACCACCTCATGTCATCAAAGTTCGTGAGTCTGAATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTGGCATGATTCAACGCCTTCAAGAGTTCCCTCCAAAGAGCAAGCTAGATCCCACAGAGTTTGGAGATCAAACTAGTACAATAACCAAAGAACACTTGGAGATCAACCTTGGTGGACTCACCGTAGAACAGGCACTGAAAGGTAACAAATTGTTCATATTAGATCACCATGATGCATTCATACCGTTTATGAATTTGATCAATGGCCTGCCCACTGCAAAGTCTTATGCCACAAGGACCATCCTTTTCTTGCAAGACGATGGCACATTGAAGCCATTAGCCATTGAGTTAAGTTTGCCACATCCTAGGGGACATGAGTTTGGAGCCGATAGTAGAGTAGTCTTGCCCCCAGCCGCAGTCAACAGCGCTGAAGGCACAATTTGGTTAATTGCCAAGGCTTATGTTGCTGTCAATGACACTGGCTATCACCAACTCATAAGCCACTGGTTAAATACTCATGCCACAATTGAGCCATTTGTCATAGCAACAAACAGGCATCTTAGTGTGCTCCACCCTATTCATAAGCTTCTCTTGCCTCACTACCGTGACACAATGAATATCAATGCACTTGCACGACAATCGCTCATCAACGCAGATGGCGTTATCGAGCGATCATTTTTGCCCGGCAAATACTCTCTGGAGATGTCTTCGGCAGTTTACAAGAGTTGGGTTTTCACTGATCAAGCCCTTCCTGCAGATCTTATCAAGAGAGGAATGGCAATTGAGGATCCCTGTGCCCCCCACGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTCAGACATGGGTTAAGAACTATGTCTCCTTGTATTACCCAACAGATGATGCAATTAAGAAAGACTCTGAGCTCCAAGCTTGGTGGAAGGAAGCTGTTGAGACGGGTCACGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGTTGAACACTCCTCAAGATTTGGTTCACATTTGCTCCATTATCATATGGATAGCTTCAGCTCTCCATGCAGCAGTGAATTTTGGACAATACCCTTATGGAGGTTTGATCCTAAACCGTCCAACTTTAACCAGAAGATTTCTCCCTGAACCAGGAAGCAAAGAATATGAGGAGCTTTCAACCAATTATCAAAAGGCTTACCTGAGAACAATTACAAGAAAGATTGAGGCCCTTGTGGACCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGATCTACCTTGGGAAGAGGGACAGTGACGATTGGACTGATGACCAAAAGGCAATTCAAGCCTTTGAAAAGTTTGGAACCAAGCTGAAGGAAATTGAGGCCAAAATCAATTCGAGGAACAAAGATTCAAGCCTTAGAAACCGTAATGGACCGGTTCAGATGCCTTATACTGTGCTTCTTCCTACCAGTGAGGAAGGCCTTACTTTCAGAGGAATTCCCAACAGCATCTCTATCTAA 2607 0.4415 MLIGSLLNRRPKIKGTVVLMTKNVFDVNDFMATTRGGPAAVAGGIFGAAQDIVGGIVDGATAIFSRNIAIQLISATKSENALGHGKVGKLTYLEKHLPSLPNLGDRQDAFDVYFEWDESFGIPGAFYIKNYMQSEFFLVSFKLEDVPNHGTILFACNSWVYNAKLYKKDRIFFANKAYLPNDTPTPLVKYRKEELENLRGDGRGERKELDRIYDYDVYNDLGNPDENDDLARPILGGSSKHPYPRRGRTGRKPTKKDPRCERPTSDTYIPRDENFGHLKSSDFLTYAIKSLTQNVLPQFNTAFGFNNEFDSFEDVRCLFDGGVYLPTDVLSKISPIPVLKEIFRTDGEQALKFPPPHVIKVRESEWMTDEEFGREMLAGVNPGMIQRLQEFPPKSKLDPTEFGDQTSTITKEHLEINLGGLTVEQALKGNKLFILDHHDAFIPFMNLINGLPTAKSYATRTILFLQDDGTLKPLAIELSLPHPRGHEFGADSRVVLPPAAVNSAEGTIWLIAKAYVAVNDTGYHQLISHWLNTHATIEPFVIATNRHLSVLHPIHKLLLPHYRDTMNINALARQSLINADGVIERSFLPGKYSLEMSSAVYKSWVFTDQALPADLIKRGMAIEDPCAPHGLRLVIEDYPYAVDGLEIWDAIQTWVKNYVSLYYPTDDAIKKDSELQAWWKEAVETGHGDLKDKPWWPKLNTPQDLVHICSIIIWIASALHAAVNFGQYPYGGLILNRPTLTRRFLPEPGSKEYEELSTNYQKAYLRTITRKIEALVDLSVIEILSRHASDEIYLGKRDSDDWTDDQKAIQAFEKFGTKLKEIEAKINSRNKDSSLRNRNGPVQMPYTVLLPTSEEGLTFRGIPNSISI* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0306 868 Gene3D - 279 364 IPR027433 -
Gso7g0306 868 Pfam Lipoxygenase 187 851 IPR013819 GO:0016702|GO:0046872
Gso7g0306 868 CDD PLAT_LH2 12 175 IPR042057 -
Gso7g0306 868 PANTHER LIPOXYGENASE 2 868 - -
Gso7g0306 868 MobiDBLite consensus disorder prediction 254 273 - -
Gso7g0306 868 Gene3D PLAT/LH2 domain 3 178 - -
Gso7g0306 868 ProSiteProfiles PLAT domain profile. 46 174 IPR001024 GO:0005515
Gso7g0306 868 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Gso7g0306 868 PRINTS Plant lipoxygenase signature 781 795 IPR001246 GO:0016491
Gso7g0306 868 PANTHER LIPOXYGENASE 2 868 IPR000907 GO:0016702|GO:0046872
Gso7g0306 868 Gene3D - 503 867 - -
Gso7g0306 868 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Gso7g0306 868 PRINTS Lipoxygenase signature 524 541 IPR013819 GO:0016702|GO:0046872
Gso7g0306 868 PRINTS Lipoxygenase signature 544 564 IPR013819 GO:0016702|GO:0046872
Gso7g0306 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 524 538 IPR020833 GO:0016702|GO:0046872
Gso7g0306 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 178 IPR036392 GO:0005515
Gso7g0306 868 MobiDBLite consensus disorder prediction 224 273 - -
Gso7g0306 868 SMART LH2_4 11 175 IPR001024 GO:0005515
Gso7g0306 868 SUPERFAMILY Lipoxigenase 179 868 IPR036226 -
Gso7g0306 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 868 IPR013819 GO:0016702|GO:0046872
Gso7g0306 868 Pfam PLAT/LH2 domain 84 173 IPR001024 GO:0005515
Gso7g0306 868 Gene3D - 365 499 - -
Gso7g0306 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 551 561 IPR020834 GO:0016702|GO:0046872
Gso7g0306 868 Gene3D - 179 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0306 Gso-Chr7 2798506 2804240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0306 12 868 Acyl Lipid Metabolism Gene Families AT1G55020 56.092 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0306 K15718 - gmx:100802459 1757.65