Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0092 ATGGAGTTCCCAGACACGCGTTTGTCTCTGAGATCGAGCTTGACGTTCGGAGAGTCGCTGTGCTCGGTGTTCATTCCGCTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCGCCAGTTGCTTCGATTTCCAATCTCCCAAGAAGAATAAGAAACATTCTTCTACCTTCGATGACATTCTCACCCTCGCCGAGGATTCTCCATTTAGTGTTAATGAAATCGAGGCGTTGCATGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAGGAAGAGCTCGCATTGGCACTGTTGAAGACCACCACTGGCGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTCGATGAAAAAAGAAACGGCATTATAGAATTCGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGCACTCCTCTGGAAAAAAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACCGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATATGGCATGGATCTGGATGAGGAAGTCCTTGATACCATTATTGATAAGACATTTCAAGATGCTGATACTAACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGACACCCGACACTCTTGAAGCACATGACTCTTCCTCATCTGAAGGACATCACCACACTGTTTAGCAGTTTCATTTTCAACACAGAAGTTGATGATTCTCACTGGCATTTTAATGGCAATCATAAACATTGA 792 0.4167 MEFPDTRLSLRSSLTFGESLCSVFIPLIGIVEALVFTFASCFDFQSPKKNKKHSSTFDDILTLAEDSPFSVNEIEALHELFKKLSSSIIDDGLIHKEELALALLKTTTGENLFLDRVFDVFDEKRNGIIEFEEFVHALSIFHPCTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSEYGMDLDEEVLDTIIDKTFQDADTNKDDKISKEEWKAFVIRHPTLLKHMTLPHLKDITTLFSSFIFNTEVDDSHWHFNGNHKH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0092 263 Pfam EF hand 114 134 IPR002048 GO:0005509
Gso7g0092 263 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 252 - -
Gso7g0092 263 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Gso7g0092 263 Gene3D - 61 253 - -
Gso7g0092 263 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Gso7g0092 263 PRINTS Recoverin family signature 117 138 - -
Gso7g0092 263 PRINTS Recoverin family signature 164 182 - -
Gso7g0092 263 PRINTS Recoverin family signature 210 230 - -
Gso7g0092 263 CDD EFh 150 219 IPR002048 GO:0005509
Gso7g0092 263 SMART efh_1 150 178 IPR002048 GO:0005509
Gso7g0092 263 SMART efh_1 194 222 IPR002048 GO:0005509
Gso7g0092 263 SMART efh_1 113 141 IPR002048 GO:0005509
Gso7g0092 263 PANTHER CALCINEURIN B 4 252 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gso7g0092 263 Pfam EF-hand domain pair 149 218 IPR002048 GO:0005509
Gso7g0092 263 SUPERFAMILY EF-hand 63 242 IPR011992 -
Gso7g0092 263 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Gso7g0092 263 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0092 Gso-Chr7 824075 827126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0092 31 253 EF-hand Containing Proteins AT5G55990 57.399 4.37e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0092 K06268 - gmx:100801943 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0092 7 824075 827126 Gso8g1606 8 15716135 15719514 GST