Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2514 ATGACCAACGCTCACAGGATGTGCGTAGCATTCACCGTCGCCACATTATCCACCGCTGCCGCCGTCATCTACGTCCTCTTCGCCGCGCGAAGGCGCAAGCAGCACAAGTCCTCGCCGTGCTATTTACACTCCGAACAGAAACCACAGTGCGCCGCGTTTAAGCGCGTCGTAGCGGATAATTCCTACACTCCGTTCAAGCACCTCATCAACGACGACGAGAATGCTTCGAATTCACATCCATATGAGGCAGAGATTACGGCATTGTTAAAAAATCCTCTGCCTGAAATTGAGCTTGGAACTGAGATCGCAGACTTGGAAATGAAGGATTCATATGTTTGGGTTCATACTGAAATGCAGTTAAAGGAGCTGGTTGATGTGTTGAGTGAAGAGAGGTTCTTTGCTGTGGACACGGAACAACATAGCTTACGATCTTTTTTAGGCTTTACAGCATTGGTTCAGATTTCTACCCGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCCATTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCATATATACGTTGTTAATCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCCCTTGCTTATTTGCTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGGCAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACGAACGGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACAATGAAAACTCTTCTTCCGATGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATTTGTTTACAACTTTTCAAGAAAGAGATTGAAGCTTCTCCTGGAGAATCTTCTGCATTATCATTATTTTCACGTCGAGTGAGCAGTCATGGCTTTCCATCAATTTCGAATGAAGCCCAGATTCAGAATATTGTGAGGCAACTGTGCACATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCGAGTCACTCTGAAATATACAACACCATAGCTCAGGCTGATATCAATATGGAAATGGGTGTCAACCCTCTCATCCCTTCCCCATCTCCTGTTGTTTGCAGTCACCTGAGTGATATCTATCATCTGCTTGCAAACAAGTTGGATAATGATATTTATTCAGTGATTCTACAGAAGTGTCTGGGTCAAAATGGGAGTTGTCCACTTTCTATATTTAATTATGCTTTGTTGGTAAACAGTAACCTAAGACCTACTTTAGCCTATAAACAACCGGGCCCAAAAAATCCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTGCTGTTTATCACAATTGCCGGATCTATGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAGGAAGCTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTATTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGCCCAGAGGACGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCCTGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCGCATGACATTGTTCTACTTTGTGTGGATTGCCATGAAGTTGCACATGCTGCTGCAGAAAAGTATAAGAGAAAAGTAGCTGTTGAATTTGGGATTCCTCTCTACCTTCAGAGGGTAGTTCATCCAGGTCAAAAGACTGAAAAACAGATTGAAGAGAGAGGTGTATCTCCTTTACAATTACGAACAGCTGCTATGGCTCTTCTACGCCATGGACCAAGAATGCCTCTCAATCGCCATGAAGAACTGACTGAGATTATAAAGAGATATTATGGAGGAAGGGAGATATCCAATGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTCGAGAAGAAGAGAGGGTTCTCTTTTAAACATTCTATAGGGAATACTGCTACAGTGCAAAAACAGGATAATCATTCTAGTTGCACAGCCGGAATGAGTAATGTGGATGTAGACACATTGAAAGTTGATGCTCATGATGGCTCATATGGAAATGAAGAAACAAGTGAAGTAGATAGAGAACATTTGACTAGAGAAGATGATTTTGGAAATTCCACTTTAGCTTCTGATATTACAGTTAATGGAACTGCCTCTGCAACTTTGAACAGAAATATGATCACAGTTGAAACTACAGACTACAATGAAAGCAGTGACTCTGCCATAAATGTTGATGATAGCTGTCTGAGCAGTAGGCAAGAAAATGGACTTAGTGAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGGAAACGAGTTGTAGAATATTTACTGAAGGAGTATGGTGAAGATGGCATCCGGGCGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTGTAAATCCACGTTTTCTTCCCGGTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGGAAGTTCAGTGTATACAATCCTGACAAAAGAGGAGCTGCTGCTAGTACGTAG 2760 0.4192 MTNAHRMCVAFTVATLSTAAAVIYVLFAARRRKQHKSSPCYLHSEQKPQCAAFKRVVADNSYTPFKHLINDDENASNSHPYEAEITALLKNPLPEIELGTEIADLEMKDSYVWVHTEMQLKELVDVLSEERFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDTIALHDFMGILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSRRVSSHGFPSISNEAQIQNIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIYNTIAQADINMEMGVNPLIPSPSPVVCSHLSDIYHLLANKLDNDIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGRLLCYCDRRKLEWYLSRDLAKLIDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKVAVEFGIPLYLQRVVHPGQKTEKQIEERGVSPLQLRTAAMALLRHGPRMPLNRHEELTEIIKRYYGGREISNEDLERALQVGMTPHERRRFEKKRGFSFKHSIGNTATVQKQDNHSSCTAGMSNVDVDTLKVDAHDGSYGNEETSEVDREHLTREDDFGNSTLASDITVNGTASATLNRNMITVETTDYNESSDSAINVDDSCLSSRQENGLSEHNSKLSLLGHGPHGKRVVEYLLKEYGEDGIRAFCQRWRQVFVDAVNPRFLPGGWDVKHSGRRDFGKFSVYNPDKRGAAAST* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2514 919 SMART 35exoneu6 111 279 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso6g2514 919 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 3 913 IPR045092 GO:0000175|GO:0000467
Gso6g2514 919 Gene3D HRDC domain 336 435 IPR044876 -
Gso6g2514 919 Gene3D - 45 316 IPR036397 GO:0003676
Gso6g2514 919 SUPERFAMILY HRDC-like 346 394 IPR010997 GO:0000166|GO:0044237
Gso6g2514 919 CDD Rrp6p_like_exo 107 300 - -
Gso6g2514 919 Pfam HRDC domain 347 389 IPR002121 GO:0003676
Gso6g2514 919 SUPERFAMILY Ribonuclease H-like 53 281 IPR012337 -
Gso6g2514 919 Coils Coil 271 291 - -
Gso6g2514 919 Pfam 3'-5' exonuclease 111 278 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso6g2514 919 PANTHER PROTEIN RRP6-LIKE 3 3 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2514 Gso-Chr6 46867918 46879373 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2514 K12951 - gmx:100791485 1858.19