Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2238 ATGTGGAGAGATCCTGGGGCTCCCGCTGATTCTTTCTATGAAACTCGCCCTGAGTGCACCGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGAATGCTGCATTTTCTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGTCGAATTCATCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTCAAGAAAGAGATGAGATAAGACAACGTCGTAGGGAGCAATATGCTACTTGGAAGGAAGAATGTCGTAAATTATTTCCTCTCATAGGAAGTGGTAGATTTATCACAGCACCTATAATTACAGAAGATGGTAGACTAGTTCAAGATCCCTTGGTTTTGTTAGAAAATAATCCAGAGAATGGAGTAATTATACCCCAAGAGGTTACCACTAATGCTACAAATAACTTAGAGAAGGTGACAGACAAGGGAATAATTCAATGGATGTTAACACTCCATCAAATAGGTCTTGATGTGATCCGCACCGATAGAACAATGGTTTTTTATGAAAAGAAAGATAACTTATCAAAACTTTGGGATATTCTCAGTGTTTATGCTCGAATAGATTCAGATGTTGGTTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTTCTTAATGATGAAGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGTAGACTGCGAGGAAATTTTAGATGCACTGATAACTCTGTTGGTGTTGAGGCTCAATTAAGTACTTTGGCTACAATCACTCAAGTAATAGACCCAAAACTTCATCAACATATAGAACATATTGGTGGAGGCGACTATCTGTTTGCTTTTCGAATGATAATGGTTCTATTTCGACGAGAATTCTCTTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCAACTTGTTTTGGATGTACGAGGATGTTGATGACAAATCAGAGGAATCTAAAGGAAGATTAAAGTCATTGCGCCACTATGGAAAGTACGAGAGAGAAAATATGAAAAATGGAGGAAAGAATGGTGAAGATCCTCCCCTTCCCATATCTGTTTTTCTTGTTGCTAGTGTGCTTAAAGACAAAAGCACAATGTTACTCCAGCAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTTGATGCCAAAAAAGCTTGTGTGGCTGCATTAAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAATCCTTAG 1308 0.3884 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWNAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFQERDEIRQRRREQYATWKEECRKLFPLIGSGRFITAPIITEDGRLVQDPLVLLENNPENGVIIPQEVTTNATNNLEKVTDKGIIQWMLTLHQIGLDVIRTDRTMVFYEKKDNLSKLWDILSVYARIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDNSVGVEAQLSTLATITQVIDPKLHQHIEHIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPNLFWMYEDVDDKSEESKGRLKSLRHYGKYERENMKNGGKNGEDPPLPISVFLVASVLKDKSTMLLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKNP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2238 435 Pfam Rab-GTPase-TBC domain 165 322 IPR000195 -
Gso6g2238 435 Gene3D - 260 434 - -
Gso6g2238 435 ProSiteProfiles TBC/rab GAP domain profile. 63 324 IPR000195 -
Gso6g2238 435 SMART tbc_4 60 347 IPR000195 -
Gso6g2238 435 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 435 - -
Gso6g2238 435 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 284 IPR035969 -
Gso6g2238 435 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 262 428 IPR035969 -
Gso6g2238 435 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 152 254 - -
Gso6g2238 435 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2238 Gso-Chr6 43280253 43290353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2238 - - gmx:100790955 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2238 6 43280253 43290353 Gso6g2238 6 43280253 43290353 ECH