Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2230 ATGCGCGCCCCCACCGCAAGAAACCTATGTACCCTCAGCAACCTATTCCGCTCGAAGTTGTTAACCCGCAAACGCAACACCAACGTTGTCCCCTTCACAAAACCTTCTCCTGAATCCGAAGACGAAATGTACCTCTCCTCAGAACCTTACCTCGCTCGTGACACTTCCCAAGGGGATTCGGTTTACGAAAATGAGGATACCAATGAGCTATCTGATATATTGTGCTCTAAAGAGGACAAGAGGTGTGCTTTAGAGGAAATTGATGATGATGAAGAAAAGAGGAAACAAACTGTAGATATACCGTGGATACTGGACCTGTCTCATGGTAAGTTGTCGGAGAAACGGAAGGATGTAGCGCGTGAGAGGAAACAAAAGTGGATTTTTAAATACACGAGTGATGACCGTTTCGACAGGTTAATTAAAATGTGTGCAGATAAACTAGGAGTGGGAAAGACCGTTAATGTGTTTGGTCAATTGGGTCGAGAAACGGGTGTGAAAGAGTATAACACATTGATAAAAATGTGCGTAAAGAAGGCTAGGGCAACTGACGATGAATTCATTGGTGTAAGAGAAATGAGTAAGGCTTTTCACCTTTACAAATCAATGAGAGATCTTGGGTATCCACTAGAAGAGAAAACATATGGTCCACTTCTTCGGTATTTAGTTGATATGGGTTTGGTTCAAGAATTTCAACTTTTCACTGATATTATCAAAACAGAGAACCCTAGTTCTGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTGAGAGTTGGCAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTCGAAGCTAGAGAAGAGACTTCTGCTTTACGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGATAGGAAAATGCAGATTTTGGATGTGGTGAAGAATATAGACGTCACAAAGCTTTCATCTGCAAAATCTATTGCTGATATATTCCAATCATTAGGCAGGCTCCATCTGGAATCTATTGCAGACGATTTACTTTTGGATTTGAGAGCATGTGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATCCCAAATTTAGCGGTAGAAGATATTATTCCAAAATTCAAGAATATGCATGAATTACTGGAAGTGTTGCCTTCAACCTCATCATATGAAAAGCTCATTTTGCATTGCTGTGGATTAGACAAGGTGGGCATAGCTCTTGATATTGTTGAAAAAATGTGTGAAGCTGGCTTTACCTTGTCAACTGAGGTGTTACAATGCATATTACAAATCTGTGAGGAATCTTATGAATATATTCTGGTCCATCGAATCTATTCCATAATATGTCGCTATCATTTGGAGTTGAACGGTGAAATATGCAGGCGTTTGGTACACTTTTTCGTCAGGATGAAAGATTTTGAAGGGGCATACAGGATGATTGCTGACTTAGAGGATATGAATTTCAAGCCTACAACAAACATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAGAACATCAGAGGAGGGTTGAGGGTCCTCAATCAAATGCGAGGTGCCAATGTAAAACCTGATTCTCATACTTTCTACTATTTGATTCAGAATTGTGAAACGGAAGAGGATATAATCAAGTATTGTGAAGAAATGAAGCAATCTGGAGTCCATGCTACAAAACAAATTTTTATGGCACTTATTAATTCATATGCAGCTTCTGGAAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATTCAAACATACCAAACAAGAGCTTAAATGAAATCAAGAGTGTACTTGTGTCAGCTCTTGCATCACATGGGCAATTGTCCGAGGCTCTTCTTGTATATGAGGAGATCAAGAAAGCTGGACATAATTTGGAGCCAAAAGCTGTTATAACTCTGATTGAGGAGTTCACTAAATTCAATGGGGAGTTGGATGGATTGCTGCTTCTACTTGAGGAAATGAATGATGTAGACTATTGGGTTGATGGTTGCTTCAAGGTTATCATGTACTGTATACGGAACAAGAATTTGAGTTCTACTATTCTTTTGTTCAAACAACTTAAGGACAAGTTCAAAAATGATGACCTAGTAATGGAAGCTCTTTTTGATGCAATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGCCTTATGCCTTCGCGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCGAATGCTGGAGATTTGAACAATGCTCGCTTGATTTGGAGAGAGTACGAAGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTGAGGATGTATCAGGCACTTTTGGCTGCAGGAGATGATAGATCTGCTCACTTTATGCTTAAGAAAATTCCACAAGATGATGCCGAGGTTTGTTCTGTCATCATAGCATGTCAGGAAACGTACAATGATCTTAATTCTGTAGAAGAGAAGAAAAAGCAAGGAAAAAGGAAAAAGAAAAAAGAAAGAAAAGAGTAA 2481 0.3906 MRAPTARNLCTLSNLFRSKLLTRKRNTNVVPFTKPSPESEDEMYLSSEPYLARDTSQGDSVYENEDTNELSDILCSKEDKRCALEEIDDDEEKRKQTVDIPWILDLSHGKLSEKRKDVARERKQKWIFKYTSDDRFDRLIKMCADKLGVGKTVNVFGQLGRETGVKEYNTLIKMCVKKARATDDEFIGVREMSKAFHLYKSMRDLGYPLEEKTYGPLLRYLVDMGLVQEFQLFTDIIKTENPSSASRLGYYEMLLWLRVGNEEMIRDICEYITVEAREETSALRESYLMALCESDRKMQILDVVKNIDVTKLSSAKSIADIFQSLGRLHLESIADDLLLDLRACDHDADNISNFIVSYAVSIPNLAVEDIIPKFKNMHELLEVLPSTSSYEKLILHCCGLDKVGIALDIVEKMCEAGFTLSTEVLQCILQICEESYEYILVHRIYSIICRYHLELNGEICRRLVHFFVRMKDFEGAYRMIADLEDMNFKPTTNMYNAIMAGYFREKNIRGGLRVLNQMRGANVKPDSHTFYYLIQNCETEEDIIKYCEEMKQSGVHATKQIFMALINSYAASGKLEKAKQVVLDSNIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLEPKAVITLIEEFTKFNGELDGLLLLLEEMNDVDYWVDGCFKVIMYCIRNKNLSSTILLFKQLKDKFKNDDLVMEALFDAIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAAGDDRSAHFMLKKIPQDDAEVCSVIIACQETYNDLNSVEEKKKQGKRKKKKERKE* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2230 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Gso6g2230 826 PANTHER OS02G0132600 PROTEIN 7 820 - -
Gso6g2230 826 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Gso6g2230 826 Pfam PPR repeat family 490 537 IPR002885 -
Gso6g2230 826 Coils Coil 806 826 - -
Gso6g2230 826 Gene3D Tetratricopeptide repeat domain 131 332 IPR011990 GO:0005515
Gso6g2230 826 Gene3D Tetratricopeptide repeat domain 666 826 IPR011990 GO:0005515
Gso6g2230 826 Gene3D Tetratricopeptide repeat domain 358 587 IPR011990 GO:0005515
Gso6g2230 826 PANTHER OS02G0132600 PROTEIN 7 820 - -
Gso6g2230 826 Pfam PPR repeat 598 623 IPR002885 -
Gso6g2230 826 Pfam PPR repeat 562 581 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2230 Gso-Chr6 43162911 43208389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2230 383 785 Glycosyltransferase AT1G05670 19.005 7.62e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2230 - - gmx:100787964 1578.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2230 6 43162911 43208389 Gso6g2230 6 43162911 43208389 ECH