Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2071 ATGCATCGTTCCTTGTCCATGAACATCCGATCAAGGTTTCTCAGCCACCAAATGATATCAGAGGTGAATCAAGTGGTGAGAAATGGAGTTATTTTGGATCCATGTGACGTGTTCATAAACCACAGAAGCTTGGACACAAAAACAACAGTAGCCGCTCCTCTTTATGACCATCTCCGCAGACATGGCTTTCACCCTTTTTTGGACAACAAAACAATGAAACCAGGTGACAAACTGTTTGATAAGATCAACAGGGCAATCTTGGAGTGCAAGATAGGGTTGGCAGTGATGTCACCGCGCTACTGTGACTCATACTTTTGCCTTCATGAGCTTGCCCTTCTCATGGAGTGCAAGAAGAAGGTGATACCAATCTTTGTTGACATTAAGCCATCTCAATTACGCGTCATCAACAACAAAAAATGGACCCTAGAAGATCAACGGCGTTTCAAATTGGCTATTGAAGAAGCAAAGTACACTGTGGGACTCACCTTCAACTCTTTGCAAGGGAACTTCTCCGGTATTGTGACAAGTGCTTCTGATATCATCATTGAGAGCTTGATAGAGTTTGAGGATGAAGAAGCGCAGATGCATCAATATTCGTACTTACCAATTAGCTAA 615 0.4276 MHRSLSMNIRSRFLSHQMISEVNQVVRNGVILDPCDVFINHRSLDTKTTVAAPLYDHLRRHGFHPFLDNKTMKPGDKLFDKINRAILECKIGLAVMSPRYCDSYFCLHELALLMECKKKVIPIFVDIKPSQLRVINNKKWTLEDQRRFKLAIEEAKYTVGLTFNSLQGNFSGIVTSASDIIIESLIEFEDEEAQMHQYSYLPIS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2071 204 Pfam TIR domain 36 133 IPR000157 GO:0007165
Gso6g2071 204 SMART till_3 34 162 IPR000157 GO:0007165
Gso6g2071 204 Gene3D - 14 157 IPR035897 -
Gso6g2071 204 ProSiteProfiles TIR domain profile. 33 156 IPR000157 GO:0007165
Gso6g2071 204 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 204 - -
Gso6g2071 204 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 133 IPR035897 -
Gso6g2071 204 PANTHER COP-1 INTERACTING PROTEIN 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2071 Gso-Chr6 38482103 38485249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2071 37 164 Miscellaneous Gene Families AT1G57670 29.577 5.61e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2071 - - gmx:100526930 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2071 6 38482103 38485249 Gso6g2071 6 38482103 38485249 ECH