Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2059 ATGCCGTTAGCGCCGTTATTCTCCGCGTCTCGGAGCCTCGCCGCTGCAGCAGCATTTCTGCGCCACTGCTCCACCGCCGCCACGACGAACCGAAGAAACCTCTATTCCCGAATCAGCCCCCTCGGAGACCCTTCCATCAGCCTGGTTCCCGTTCTCGACGAGTGGATCGAAGAGGGTAACGCCGTCGACGGGCCCCACCTCCATCACATCATCAAAATCCTGCGTACCCGCAATCGCAACACCCAAGCACTCGAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTCCCAATTTCCTCACGTGACCAAGCAGTGCAGCTGGATCTCATTGGTAGAGTTCATGGAGTGGAGAGTGCAGAGAGGTATCTTCAGAGTTTGAGTGATGGAGACAAAACTTGGAAGGTTCATGGTGCTCTTTTGAATTGTTATGTGAGAGAAGGGTTGGTTGATAAGTCACTCTCCCTGATGCAGAAAATGAAGGACATGGGTTTTGTTTCCTTTCTCAATTACAACAACATAATGTCCCTGTACACGCAAACCCAACAATATGAGAAAGTCCCTGGTGTTCTGGAACAGATGAAGAAGGATGGTGTTCCTCCAAACATTTTCAGCTACAGGATATGCATAAACTCATATTGCGTGAGAGGTGACCTCACAAATGTGGAGAAACTGTTGGAGGAGATGGAGAGGGAACCCCATATTGGCATAGATTGGATTACATACTCTATGGTGACCAATTTCTACATAAAAGCAGACATGAGGGAGAAGGCTCTGGTGTGCCTAATGAAGTGTGAGAAAAAGACACACAGGGGCAATACAGTTGCCTACAACCATCTGATTTCACACAATGCAGCTCTTAGGAGCAAGGGGGGCATGATGAGAGCTTGGAAGCTCCAGAAGGCCAACTGCAAGAAGCAGCTTAATAGGGAGTATATAACAATGTTGGGTTGCTTGGTGAAGCTGGGGGAGCTTGATAAAGCTGAAAAAGTACTCGGTGAGTGGGAGTTATCTGGTAACACTTGTGATTTCAGAGTGCCTAACATCCTTCTGATTGGGTATTGCCAAAGGGGATTGGTTGAGAAGGCAGAAGCACTTCTCCGGAAAATGGTTGCGGAAGGGAAGACGCCAATTCCCAACAGTTGGAGCATCGTTGCATCTGGGTATGTGGCCAAGGAGAACATGGAGAAGGCATTTCAGTGCATGAAGGAAGCTGTGGCTGTGCATGCACAGAATAAACGGTGGAGACCAAAAGTTGATGTCATTTCCAGCATATTCAGTTGGGTCACTAATAACAGAGATATAGAGGAAGCGGAAGATTTTGTCAATTCATGGAAGTCTGTGAATGCAATGAATAGGGACATGTATCTGTCTTTGATGAAGATGTGTATTAGATATGGGAAGCATGTAGATGGGATTTTAGAAAGTATGAAAGCTGATAATATAGAGATCGATGAAGAGATAAAGGAAACTCTTAACTCATAA 1479 0.4665 MPLAPLFSASRSLAAAAAFLRHCSTAATTNRRNLYSRISPLGDPSISLVPVLDEWIEEGNAVDGPHLHHIIKILRTRNRNTQALEVSEWMSSKGLPISSRDQAVQLDLIGRVHGVESAERYLQSLSDGDKTWKVHGALLNCYVREGLVDKSLSLMQKMKDMGFVSFLNYNNIMSLYTQTQQYEKVPGVLEQMKKDGVPPNIFSYRICINSYCVRGDLTNVEKLLEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEKKTHRGNTVAYNHLISHNAALRSKGGMMRAWKLQKANCKKQLNREYITMLGCLVKLGELDKAEKVLGEWELSGNTCDFRVPNILLIGYCQRGLVEKAEALLRKMVAEGKTPIPNSWSIVASGYVAKENMEKAFQCMKEAVAVHAQNKRWRPKVDVISSIFSWVTNNRDIEEAEDFVNSWKSVNAMNRDMYLSLMKMCIRYGKHVDGILESMKADNIEIDEEIKETLNS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2059 492 Gene3D Tetratricopeptide repeat domain 47 166 IPR011990 GO:0005515
Gso6g2059 492 Gene3D Tetratricopeptide repeat domain 167 291 IPR011990 GO:0005515
Gso6g2059 492 SUPERFAMILY TPR-like 315 411 IPR011990 GO:0005515
Gso6g2059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Gso6g2059 492 Gene3D Tetratricopeptide repeat domain 378 492 IPR011990 GO:0005515
Gso6g2059 492 Pfam PPR repeat family 169 212 IPR002885 -
Gso6g2059 492 TIGRFAM PPR: pentatricopeptide repeat domain 202 230 IPR002885 -
Gso6g2059 492 TIGRFAM PPR: pentatricopeptide repeat domain 310 337 IPR002885 -
Gso6g2059 492 TIGRFAM PPR: pentatricopeptide repeat domain 346 373 IPR002885 -
Gso6g2059 492 TIGRFAM PPR: pentatricopeptide repeat domain 135 164 IPR002885 -
Gso6g2059 492 TIGRFAM PPR: pentatricopeptide repeat domain 169 201 IPR002885 -
Gso6g2059 492 Pfam PPR repeat 346 372 IPR002885 -
Gso6g2059 492 Pfam PPR repeat 310 337 IPR002885 -
Gso6g2059 492 Pfam PPR repeat 379 402 IPR002885 -
Gso6g2059 492 Pfam PPR repeat 137 163 IPR002885 -
Gso6g2059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 230 IPR002885 -
Gso6g2059 492 PANTHER OS12G0527900 PROTEIN 21 491 - -
Gso6g2059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Gso6g2059 492 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 21 491 - -
Gso6g2059 492 Gene3D Tetratricopeptide repeat domain 292 371 IPR011990 GO:0005515
Gso6g2059 492 SUPERFAMILY HCP-like 140 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2059 Gso-Chr6 38158903 38162471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2059 34 458 EF-hand Containing Proteins AT1G02150 31.308 6.25e-72 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2059 - - gmx:100804385 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2059 6 38158903 38162471 Gso6g2059 6 38158903 38162471 ECH