Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2042 ATGACTCCACCCGTCGAACCACAACATTTCAAGAGTAAAGTGTTTTTCGACCCTAATGTCATTGAAATTACACCTCCAACTCTATATAATAACCCTCCTAATTCTACTAAGCAGAAAGAGGCCATTTTGAATCCTGAGGTTATCAATGTCGAAAGCGATGATAATTCTACTGAGTTAATATTATTTGGGCAAAGAGTTAGAAAGGGGAAGGAAATTCAGACCACCCATCAAAACATGGAAGTGTGTGAGGATGTAATGGGTAAATCTTTATGGACTGACAAGCATAGTTCTAGTTCTGACAGCTCAAACCACAAGGATGATGTTGAATACTATGATTTTTTTTCAAAAGATCATACGATGACAACATCTCAACCTTCGTTGTCACTGGAGCCTTCTGGAGTACAATACTCTCAAACTCCCCTGAGTAAGAAGAAATCAAATGACTCACAACAAAGGAAGCAGAAGTTAAAGTTGCCATTGGAAATTGGGTCATCTACATCTTTTGAGAGTGGGGCACCACATTCGGGACTTCTCCCTACAGGTGGGGCATCAGATTGGGGACTGTTGCCAGCAGGTGGAGCACCACAGGCAGTAGGTGGGACACTACACTTGGGACTGCTACCTGCAGGTGGGATGTTGCCTGCAGCTGGAGCACCACAGGCAGCAGGTGGGACACTACATTGGGGACTGCTACCTGCAGGTGGGATGCCGCCGGCCGGTGGGACACCAGATTGGGGGATGTTGCCTGCAGCTGGAGCACCACAGGCAGCAGGTGGGACCCTACATTGGGGACTGCTACCTGCAGGTGGGATGCCGCCGGCAGGTGCCACACCGGACTGGGGACTGTTGTCCACTGGTGGAACACCACAGGTGGTCAGTGGGACACCACACTGGGGACTGCCACCTGCAGGTGGAATATCGCCTGCAAGTGGGACACCAGATTGGGGACTGCTGTCTGCAGGTGGGACACCACAGGCGGTAGGTGGGACAACATATTGGGGGCTGCCGCCTGCAGGTGGCGCACCAGAATGGGGACTGCCGTCCACAGTTCCAATGATGACACTTTACAGTCCATATCATTCAAATTTTGTTGGACCTTCATATCATCATCCAGGAGCTGAATCTATTAATCAGATGTGGTCGACGAATGCTCATCACTTGCAGGCGATCCCTAATTATAATTATCCTCATCCTTATAGTTATACCTATGATTATAATTATACAGCTCCCGTTGTTCACCATTACCATGTCCCTCCTGCGCCATTGTTTCATAACTCTTTGGTTCAAAATTCTGTGGGAGATGAAAATAATGGAGCAACTACCAATAGTACTGTTGCTACAATTTCAGATGAAGCTAGAGAGGAAATTCTGGTGAAATTTCGAAACTTTAAACAATTTGACGTTGTTGAAGACGTTTCAGACCATCACTTTGTTAATGCCGACTCTTCCATGCAACAGCATTCAAAGAATTGGGCTAAAAGAATCCAGGGAGAGTGGAAGTCATTGGAGAAGGATTTACCAGATTCAATATTTGTCAGAGTTTATGAATCAAGAATAGATCTTCTGAGGGCCGTGATTATTGCAGCAGAGGGAACACCTTATCATGATGGCCTTTTCTTTTTTGATGTTTACTTCCCAAGTGGCTATCCCCATGTACCGCCGAACGTCCACTACCATTCCGGAGGGCTTAGGCTCAACCCAAATTTATATAATTGTGGCAAAGTTTGTCTTAGTCTACTTAACACCTGGACTGGCCATCAGAATGAGCAGTGGATTTCAGGTGTTTCAACAATTCTACAGGTTCTGGTCTCTATACAGGGTCTAATCTTGGTTGCAAAGCCTTTCTTTAATGAGCCTGGATATGCACATTTGAACGGTTCACAATATGGTGAAATTAGTTCTTTGCGGTACAATGAGGACTCATTCATCCTATCATTGAGGACAATGATGTATATCATGAAAAGGCCTCCAAAGAATTTCGAGGACTTTGTTGTTGGGCACTTCTGCCGCCGAGCTCATGATATTCTTGAGACATGCAAAGCATACATTGATGGGGCTCAAGTTGGTTGTGTGGTCAAAGGAGGGGCACAAGATGTTGATCAGGGTGACAACAGTAGTTCAATCCAGTTTAGGACTTCTTTGGCTGCAGTTGTGCATATGCTTATTAAAGAGTTTACACAAATTGGAGCCAAGGATTGTGACCAAGTCTTTCCATCAACAGCAGCAGGAAATCCGTCTGGTGAAATGCTGACAGCAGCGGGAAATCCGTCCCTTGTAATGCTGACGGAAGCAGGAAATCCATCGGGTGAAATGTTGACGGCAGCGGGAAATTTGTCCGGTGTAATGCCAGCAGCAGGGGGAAATCCATCCATTGTAATGCTGGGAAATCCATCCGTTGAAATGCCGACAGCAGCGGGAAATTTGTCCGGTATAATGTCAGCAGCAGTGGAAAATCCGTCCGTTGAAATGCCGGGAAATTTGTCCGGTGTAATGCCGACAACAGTGGGAAATCCATCCGTTGAAATGTTGGGAAATCAGTCCGGTGTAATGATGACAGCAGCGGGAAATCCATCCACCGTTGAAATGCCTGATTCTGCTGCAATTCCTTGA 2610 0.4617 MTPPVEPQHFKSKVFFDPNVIEITPPTLYNNPPNSTKQKEAILNPEVINVESDDNSTELILFGQRVRKGKEIQTTHQNMEVCEDVMGKSLWTDKHSSSSDSSNHKDDVEYYDFFSKDHTMTTSQPSLSLEPSGVQYSQTPLSKKKSNDSQQRKQKLKLPLEIGSSTSFESGAPHSGLLPTGGASDWGLLPAGGAPQAVGGTLHLGLLPAGGMLPAAGAPQAAGGTLHWGLLPAGGMPPAGGTPDWGMLPAAGAPQAAGGTLHWGLLPAGGMPPAGATPDWGLLSTGGTPQVVSGTPHWGLPPAGGISPASGTPDWGLLSAGGTPQAVGGTTYWGLPPAGGAPEWGLPSTVPMMTLYSPYHSNFVGPSYHHPGAESINQMWSTNAHHLQAIPNYNYPHPYSYTYDYNYTAPVVHHYHVPPAPLFHNSLVQNSVGDENNGATTNSTVATISDEAREEILVKFRNFKQFDVVEDVSDHHFVNADSSMQQHSKNWAKRIQGEWKSLEKDLPDSIFVRVYESRIDLLRAVIIAAEGTPYHDGLFFFDVYFPSGYPHVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWTGHQNEQWISGVSTILQVLVSIQGLILVAKPFFNEPGYAHLNGSQYGEISSLRYNEDSFILSLRTMMYIMKRPPKNFEDFVVGHFCRRAHDILETCKAYIDGAQVGCVVKGGAQDVDQGDNSSSIQFRTSLAAVVHMLIKEFTQIGAKDCDQVFPSTAAGNPSGEMLTAAGNPSLVMLTEAGNPSGEMLTAAGNLSGVMPAAGGNPSIVMLGNPSVEMPTAAGNLSGIMSAAVENPSVEMPGNLSGVMPTTVGNPSVEMLGNQSGVMMTAAGNPSTVEMPDSAAIP* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2042 869 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 490 650 IPR000608 -
Gso6g2042 869 Gene3D Ubiquitin Conjugating Enzyme 449 730 IPR016135 -
Gso6g2042 869 MobiDBLite consensus disorder prediction 121 145 - -
Gso6g2042 869 SMART ubc_7 493 650 - -
Gso6g2042 869 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 35 740 - -
Gso6g2042 869 Pfam Ubiquitin-conjugating enzyme 494 620 IPR000608 -
Gso6g2042 869 MobiDBLite consensus disorder prediction 121 179 - -
Gso6g2042 869 CDD UBCc 493 619 IPR000608 -
Gso6g2042 869 SUPERFAMILY UBC-like 476 657 IPR016135 -
Gso6g2042 869 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 35 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2042 Gso-Chr6 36876134 36882262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2042 438 735 Miscellaneous Gene Families AT2G33770 46.179 1.59e-81 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2042 K10581 - gmx:100791144 1707.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2042 6 36876134 36882262 Gso6g2042 6 36876134 36882262 ECH