Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2020 ATGGCTGCTGCTACTGCTACTGCGGACAGCGTGTCCTCGCAGGCATACCTTGAAGGAAACGCAGTGAAGGAAACGAGAATTCTGATATCAGAACTCTGTCGCCACTTCTATTCTCTCGGATGGGTCTCTGGAACTGGTGGCAGCATCACCATCAAAGTCCACGATGACTCCATTTCCAAACCCCACCAACTCATACTCATGTCCCCTTCAGGTGTTCAGAAGGAAAGAATGGAACCAGAGGACATGTATGTGTTATCTCACACTGGATCAGTCTTGTCTGCTCCATCTCCCAAACCTTACCCTCATAAACCTCCCAAGTGTTCTGATTGTGGTCCACTTTTCATGAAGGCATATGAAATGTGTGATGCTGGGGCAGTTATCCACAGTCATGGAATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTAGCAAAGGAATTTAAAATAACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCATGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTGGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGA 1557 0.4207 MAAATATADSVSSQAYLEGNAVKETRILISELCRHFYSLGWVSGTGGSITIKVHDDSISKPHQLILMSPSGVQKERMEPEDMYVLSHTGSVLSAPSPKPYPHKPPKCSDCGPLFMKAYEMCDAGAVIHSHGIESCLVTMLNPLAKEFKITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPIKSLRSLMIAGESNASDKTRKASGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYDTPDTEADIKLLCSQVQSDLKQGIAGAVPIPSDGACKRAVIDALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGIVFDDVPEALEKWHTLGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISVRPGNAPLPENHGFKMISSFSEI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2020 518 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 9 518 IPR017714 GO:0005737|GO:0019509|GO:0046872
Gso6g2020 518 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 14 238 IPR027514 GO:0005737|GO:0019509|GO:0046872
Gso6g2020 518 SUPERFAMILY HAD-like 277 518 IPR036412 -
Gso6g2020 518 SFLD enolase-phosphatase 277 517 IPR023943 GO:0000287|GO:0019509|GO:0043874
Gso6g2020 518 CDD HAD_EP 278 499 IPR023943 GO:0000287|GO:0019509|GO:0043874
Gso6g2020 518 Gene3D - 386 518 IPR023214 -
Gso6g2020 518 Gene3D - 290 385 - -
Gso6g2020 518 Pfam haloacid dehalogenase-like hydrolase 277 489 - -
Gso6g2020 518 SUPERFAMILY AraD/HMP-PK domain-like 23 243 IPR036409 -
Gso6g2020 518 Hamap Enolase-phosphatase E1 [mtnC]. 275 518 IPR023943 GO:0000287|GO:0019509|GO:0043874
Gso6g2020 518 SMART Aldolase_II_2 27 230 IPR001303 -
Gso6g2020 518 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 14 518 IPR027505 -
Gso6g2020 518 Gene3D - 22 246 IPR036409 -
Gso6g2020 518 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 29 235 IPR017714 GO:0005737|GO:0019509|GO:0046872
Gso6g2020 518 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 9 518 - -
Gso6g2020 518 Pfam Class II Aldolase and Adducin N-terminal domain 29 229 IPR001303 -
Gso6g2020 518 SFLD C1.5.4: Enolase-phosphatase Like 277 517 - -
Gso6g2020 518 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 277 516 IPR023943 GO:0000287|GO:0019509|GO:0043874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2020 Gso-Chr6 36171826 36190346 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2020 K16054 - gmx:100794485 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2020 6 36171826 36190346 Gso6g2020 6 36171826 36190346 ECH