Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1969 ATGGCGAACCCAATCGACGGTGGCGAGTTCGAGTGCCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGCGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGACTATACGCCGAGCAAATCTCCGGCACCTCCTTCACTTCTCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAACCATCAGTGACTCACGAACCGTTCAAGCCAAGAGTACCGGGTAATGGGAGGATTTTGAGTGAGTTCAACAACTCCAGCAGTTCTGCTAACCCAAATCAGCTTAGATGGAAGCCCATGGATGCACCCGATTCGCCAATGGATTTCATTGATGGGTTGTCCACCATGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACAATGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTATCACTACTGAATGTGGAAGATTGAAAGTTTCTCCGGGTGAAATTGCTATAATACCTCACGGTTTTCGTTTTTCTGTGAATCTGCCTGATGGTCCATCCCGCGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTTGCTTCCCCAAGGGATTTCCTTGTTCCTAGTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTCTTTGATGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATAAGTATGATTTAAGCAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACCGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTTCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTTATTCATGGTGGCTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAATTGTATGACTCCCCATGGTCCTGATACAAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGGAGGACCTTGTAAGATCACGGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCCTGGAATCACCGTTCTTGGATCAAGATTATTACCAATGTTGGATTGGCCTGAAATCTCATTTTACAGTTACTGAGACATCTCCTGAAAACACGAACTTGCGGAATGGACAGTGA 1368 0.4627 MANPIDGGEFECLSGFGNHFSSEALAGALPAAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSSSSANPNQLRWKPMDAPDSPMDFIDGLSTMCGSGSSFMRHGYAIHMYNANKSMDNCAFCNADGDFLIVPQQGRLLITTECGRLKVSPGEIAIIPHGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPSAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHNCMTPHGPDTKSYEATIARGNDGGPCKITDTMAFMFESSLIPRISQWALESPFLDQDYYQCWIGLKSHFTVTETSPENTNLRNGQ* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1969 455 Pfam Homogentisate 1,2-dioxygenase N-terminal 13 284 IPR046452 -
Gso6g1969 455 Gene3D Jelly Rolls 273 410 IPR014710 -
Gso6g1969 455 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 440 - -
Gso6g1969 455 Pfam Homogentisate 1,2-dioxygenase C-terminal 285 439 IPR046451 -
Gso6g1969 455 SUPERFAMILY RmlC-like cupins 11 440 IPR011051 -
Gso6g1969 455 CDD cupin_HGO_N 103 211 - -
Gso6g1969 455 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 440 IPR005708 GO:0004411|GO:0006559|GO:0006570
Gso6g1969 455 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 11 439 IPR005708 GO:0004411|GO:0006559|GO:0006570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1969 Gso-Chr6 34164436 34170025 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1969 K00451 - gmx:100779961 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1969 6 34164436 34170025 Gso6g1969 6 34164436 34170025 ECH