LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g1951	ATGATGAAGCCATCGATGCTCAGATCTCTTCACTCTGCCGCCACCCGCGGCGCCTCCCACCTCTCCCGCCGTGGCTACGCCTCCGAGCCGGTGCCGGAGCGCAAGGTGGCCGTTCTAGGTGCCGCCGGCGGGATCGGGCAACCCCTCTCCCTTCTCATGAAGCTCAACCCCCTCGTTTCCAGCCTCTCCCTCTACGATATCGCCGGAACTCCCGGTGTCGCCGCCGATGTCAGCCACATCAACACCGGATCTGAGGTGGTGGGGTACCAAGGTGACGAAGAGCTCGGAAAAGCTTTGGAGGGTGCAGATGTTGTTATAATTCCTGCTGGTGTGCCCAGAAAGCCTGGAATGACTCGTGATGATCTTTTTAACATCAATGCTGGCATTGTTAAGACACTGTGTACTGCTATTGCTAAGTACTGCCCTCATGCCCTTGTTAACATGATAAGCAATCCTGTGAACTCCACTGTTCCTATTGCTGCTGAAGTTTTCAAGAAGGCAGGAACGTATGATGAGAAGAGATTGTTTGGTGTTACCACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCCAATGTTCCAGTTGCTGGTGTTAATGTACCTGTTGTGGGTGGCCATGCAGGCATTACTATTCTGCCATTATTTTCTCAAGCCACACCAAAAGCCAATCTTGATGATGATGTCATTAAGGCTCTTACAAAGAGGACACAAGATGGAGGAACAGAAGTTGTAGAAGCTAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCCTATGCTGGTGCCCTATTTGCTGATGCTTGCCTTAAGGGCCTCAATGGAGTCCCAGATGTTGTGGAGTGCTCATTCGTGCAATCCACTGTTACTGAACTTCCCTACTTTGCTTCCAAGGTGAGGCTTGGGAAGAATGGAGTGGAGGAAGTTCTGGGCTTAGGACCTCTCTCAGATTTTGAGCAACAAGGCCTCGAAAGCCTTAAGCCTGAACTCAAATCATCAATTGAGAAGGGAATCAAATTTGCCAACCAGTAA	1038	0.5019	MMKPSMLRSLHSAATRGASHLSRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPYFASKVRLGKNGVEEVLGLGPLSDFEQQGLESLKPELKSSIEKGIKFANQ*	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g1951	345	CDD	MDH_glyoxysomal_mitochondrial	35	343	IPR010097	GO:0006099\|GO:0030060
	Gso6g1951	345	PIRSF	Lac_mal_DH	30	344	IPR001557	GO:0016616\|GO:0019752
	Gso6g1951	345	PANTHER	MALATE DEHYDROGENASE	2	344	-	-
	Gso6g1951	345	Pfam	lactate/malate dehydrogenase, NAD binding domain	35	177	IPR001236	GO:0016491
	Gso6g1951	345	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	35	177	IPR036291	-
	Gso6g1951	345	Gene3D	-	179	344	IPR015955	GO:0003824\|GO:0016616
	Gso6g1951	345	SUPERFAMILY	LDH C-terminal domain-like	178	344	IPR015955	GO:0003824\|GO:0016616
	Gso6g1951	345	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gso6g1951	345	Gene3D	-	33	178	-	-
	Gso6g1951	345	PANTHER	MALATE AND LACTATE DEHYDROGENASE	2	344	-	-
	Gso6g1951	345	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	179	342	IPR022383	GO:0016616
	Gso6g1951	345	ProSitePatterns	Malate dehydrogenase active site signature.	178	190	IPR001252	GO:0006108\|GO:0016615
	Gso6g1951	345	TIGRFAM	MDH_euk_gproteo: malate dehydrogenase, NAD-dependent	35	344	IPR010097	GO:0006099\|GO:0030060

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g1951	Gso-Chr6	32847462	32852016	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g1951	K00026		-	gmx:100777296	650.588

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso6g1951	6	32847462	32852016	Gso6g1951	6	32847462	32852016	ECH