Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1920 ATGTCCACTTCGAAACCCATATCCCCTTTTCGACTCACCTCCCTCCTCCGTTCCACGAAAGACCCCTCCCTCGCCCTCCAGCTCTTCCTCAACCCTAACCCTAACCCTAATCCTAACCCTCGCCCCCTGCGCCACTCCCTCCGCTCCTACGATCTCCTCATCACCAAACTCGCCCGCGCCAAAATGTTCCCCCAAATGGAACAAATCCTCCACCAACTCCAAACCCTAACCCAATTCCCCGTCCCCGAACCCCTCCTCTGCCGCGTCATCATTTCCTACGCACGCGCCCGCCTCCCCTCCCGCGCCCTGCGCACCTTCCTCTCAATCCCCTCCTTCCGCTGCACCCCCACTCTCAAGTCCTTCAACTCCCTCCTCCACGCGCTCCTACTCTGCCGCGACTTCCCTTCCCTCCCGCGCCTCCTCCCGCGCCTCCGCCACTTCTCCGCCTCCGGCCCCGACGCCTGCACCTACAACATCCTCATCCGCGCTTGCTCCCTGAACAACAACGACCTTGCACACGCACGCAAACTGTTCGACGAAATGCTCACGCTCGGGGTTCGTCCGACTCAAGTCACGTTCGGAACTCTGATTAACATGCTCTGCAAAGACCCGCATTTGAACTTGCGGGAGGCGTTTAGTGTGAAGGAGGACATGGAGAGGGTTTTTAAATTGAAGCCTAATGTTTTTGTGTACACTAATTTGATCAAAGCCGTTTGCGAGGTTGGGGACTTCGATTGTGCGTTTAGGTTGAAGGATGAGATGGTGAGGAACAATTTGAGGCTGGATGTTGTGGTGTACAACACTTTGACTTCCGCAGTTTTTAAAGCGGGGAAGAAGGGTTTAGGGTATAGGATTTTGGAGGAGATGAAGAGTGGCGGGGTGAAGCCGGATGCGGTGACGTGTAATGTGTTGATTGGGGAGTTTTGTAGGGAGGGGAATTTGGTGGAGGCTTATAGGGTTTTGGATGATGGGGTGGAGGGTGTGAAGCCTGATGTTTTTGGGTACAATGTGGTTATTGGATGGTTGTGTAAAGAGGGAAAATGGAGGGAGGCGGATGATTTGTTTCGGGACATGCCAAGGCGGCAGTGTGTTCCTGATGTTGTGACCTACCGGACAGTGTTTGATGGGCTTTGTCAGTGGATGCAGTTTGAGGAAGCTGGGTTGGTTTTGGAGGAGATGGTTTTTAAAGGCTATGTTCCGTGTTCCTCAAGTTTGAATGAGTTTGTTGGCAGGTTGTGCCAGGAAGGGGATTTTGAGTTGTTGGGGAAGGTTTTGAGTGGTTTGGGTGGAGGGTTTTTTTGCAATGAGAATGTGTGGAAAACTGTGGTTTCCTTGGTTTGTAAGTCAGAGAAGCTGTCAGGGGCTTTTGAGCTTTTAGATGCATTGGTGTTGGCATGA 1398 0.5286 MSTSKPISPFRLTSLLRSTKDPSLALQLFLNPNPNPNPNPRPLRHSLRSYDLLITKLARAKMFPQMEQILHQLQTLTQFPVPEPLLCRVIISYARARLPSRALRTFLSIPSFRCTPTLKSFNSLLHALLLCRDFPSLPRLLPRLRHFSASGPDACTYNILIRACSLNNNDLAHARKLFDEMLTLGVRPTQVTFGTLINMLCKDPHLNLREAFSVKEDMERVFKLKPNVFVYTNLIKAVCEVGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYRILEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVEGVKPDVFGYNVVIGWLCKEGKWREADDLFRDMPRRQCVPDVVTYRTVFDGLCQWMQFEEAGLVLEEMVFKGYVPCSSSLNEFVGRLCQEGDFELLGKVLSGLGGGFFCNENVWKTVVSLVCKSEKLSGAFELLDALVLA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1920 465 Gene3D Tetratricopeptide repeat domain 325 464 IPR011990 GO:0005515
Gso6g1920 465 Gene3D Tetratricopeptide repeat domain 206 324 IPR011990 GO:0005515
Gso6g1920 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Gso6g1920 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Gso6g1920 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Gso6g1920 465 TIGRFAM PPR: pentatricopeptide repeat domain 368 400 IPR002885 -
Gso6g1920 465 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Gso6g1920 465 TIGRFAM PPR: pentatricopeptide repeat domain 230 262 IPR002885 -
Gso6g1920 465 TIGRFAM PPR: pentatricopeptide repeat domain 335 367 IPR002885 -
Gso6g1920 465 TIGRFAM PPR: pentatricopeptide repeat domain 155 189 IPR002885 -
Gso6g1920 465 Pfam Pentatricopeptide repeat domain 249 308 IPR002885 -
Gso6g1920 465 Pfam PPR repeat family 152 202 IPR002885 -
Gso6g1920 465 Pfam PPR repeat family 330 379 IPR002885 -
Gso6g1920 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 188 IPR002885 -
Gso6g1920 465 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 463 - -
Gso6g1920 465 Gene3D Tetratricopeptide repeat domain 81 205 IPR011990 GO:0005515
Gso6g1920 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Gso6g1920 465 PANTHER OS05G0207200 PROTEIN 1 463 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1920 98 463 Glycosyltransferase AT1G05670 28.032 1.35e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1920 - - gmx:100781017 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1920 6 31079917 31084477 Gso6g1920 6 31079917 31084477 ECH