Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1917 ATGGGTGGTGGATTTAGAGTGCTTCACTTAGTTAGACCATTTCTCTCGTTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTTGTTTGCAGTCAGCTTCCTCTGTATGGCATACACTCAACAACAGGTGCTGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCCCTTCGTGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACCATCTTGATCTTCCTAATTGTGATATACTTCCAAGGATTTCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACATCGGGAATCAAACTTGCAGAAAGAACTGAACCGATACATTCCCACCGCGGCAGCATTTGGAGGCATATGTATCGGTGCATTGACTGTGTTGGCAGATTTCATGGGGGCAATTGGTTCAGGGACAGGAATATTGCTTGCAGTAACAATCATCTATCAGTACTTCGAAACATTTGAGAAGGAGAGAGCAAGCGAGCTTGGCTTCTTCGGTTTCTAA 1431 0.4347 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATILIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVDLLGKWKESEYGGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1917 476 PANTHER F9K20.24 PROTEIN 1 476 - -
Gso6g1917 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Gso6g1917 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Gso6g1917 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Gso6g1917 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Gso6g1917 476 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 31 467 IPR002208 GO:0015031|GO:0016020
Gso6g1917 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Gso6g1917 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Gso6g1917 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 476 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1917 Gso-Chr6 31010595 31014775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1917 1 476 Miscellaneous Gene Families AT2G34250 93.067 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1917 K10956 - gmx:100817566 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1917 6 31010595 31014775 Gso6g1917 6 31010595 31014775 ECH