LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g1878	ATGATCGTTAAGAAGGGCTTCCTCACCACCGTGGCGCAAAAATGCAACACCCTAACCCAACTCAAGCAGCTCCACGCCCACATCCTCCGATGCCGCATCAACGACACGCCTTACGCCCTCGCCCCGCTTCTCTCCGTCCTAGCCACCTCCAACGACGCGTCGTTCTTCTCCTACGCTCGCTCCATCTTCCGCCACCTCACTAACCGCAACACCTTCATGCACAACACCATGATCCGCGGCTACCTCCAATGCCGGTCACCCCTCCACGCCGTGTCCTGCTACTTGTCCATGCTCCAAAACGGCGTTGCCGTTAACAACTACACGTTCCCACCTTTAATCAAAGCCTGCATTGCGCTTCTTCCTTCTTCTCCTTCGAACATTGTTGGTCGTTTGGTGCACGGTCATGTCGTTAAGTTCGGTCTCCGCAACGACCCTTACGTGGTGAGCGCGTTTATTGAGTTTTACTCCGTTTCTCGCGAGGTGGACACCGCGAGAGTGTTGTTTGATGAAACGTCATATAAAGATGTGGTTTTGGGAACTGCGATGGTTGACGGTTATGGCAAAATGGGGAATGTGAAGAGTGCAAGAGAGGTGTTTGATAAAATGCCTGAGAGAAACGCTGTGTCGTGGAGTGCCATGATGGCGGCATATTCTCGTGTCAGTGACTTCAAGGAAGTGCTGGCTTTGTTTACAGAGATGCAGAACGAGGGAACTGAGCCAAACGAGTCTATACTCGTTACGGTACTTACTGCGTGTGCGCACCTTGGCGCACTCACGCAGGGACTGTGGGTGCATTCCTATGCAAGACGATTCCATCTTGAGTCGAATCCGATTCTGGCCACGGCTTTGGTGGACATGTATTCGAAATGTGGATGTGTGGAATCTGCTTTATCTGTTTTTGATTGCATTGTCGACAAGGACGCTGGCGCGTGGAATGCTATGATTTCAGGCGAGGCATTGAATGGCGATGCAGGGAAATCGTTGCAGTTGTTTCGCCAAATGGCTGCTTCCAGGACCAAGCCGAACGAGACTACGTTTGTGGCTGTCCTCACTGCTTGTACTCATGCAAAGATGGTTCAGCAGGGCCTTTGGTTGTTTGAAGAAATGAGTAGCGTGTATGGAGTTGTGCCACGAATGGAGCATTATGCATGTGTTATTGACCTTTTGTCGAGAGCTGGGATGGTGGAGGAGGCTGAGAAATTTATGGAGGAGAAGATGGGTGGACTCACAGCTGGTGATGCTAACGTGTGGGGTGCTCTTCTGAATGCGTGTAGAATACATAAGAATATTCATGTTGGGAATAGGGTGTGGAAAAAGCTGGTTGATATGGGGGTCACTGACTGTGGTACTCATGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGATGTGGAGGCAAACAAAGTTAGGAGTAGGATTGAAGAAGTAGGGATGAAAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATAATGAAGTTGAAGAGTTTCTTGCAGGCGATCATTCTCATCCACAAGCACAGGAAATGTGCAAATTGCTCGATTCCATTCTCAAGATGGGGACTTTAGAGCACTTCTGA	1581	0.4959	MIVKKGFLTTVAQKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEEFLAGDHSHPQAQEMCKLLDSILKMGTLEHF*	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g1878	526	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	8	489	-	-
	Gso6g1878	526	PANTHER	-	8	489	-	-
	Gso6g1878	526	TIGRFAM	PPR: pentatricopeptide repeat domain	208	242	IPR002885	-
	Gso6g1878	526	TIGRFAM	PPR: pentatricopeptide repeat domain	73	105	IPR002885	-
	Gso6g1878	526	TIGRFAM	PPR: pentatricopeptide repeat domain	180	205	IPR002885	-
	Gso6g1878	526	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	206	240	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat family	206	253	IPR002885	-
	Gso6g1878	526	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	70	104	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat	73	102	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat	310	334	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat	281	306	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat	382	404	IPR002885	-
	Gso6g1878	526	Pfam	PPR repeat	345	370	IPR002885	-
	Gso6g1878	526	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	307	341	IPR002885	-
	Gso6g1878	526	Gene3D	Tetratricopeptide repeat domain	281	497	IPR011990	GO:0005515
	Gso6g1878	526	Gene3D	Tetratricopeptide repeat domain	131	262	IPR011990	GO:0005515
	Gso6g1878	526	Gene3D	Tetratricopeptide repeat domain	8	119	IPR011990	GO:0005515
	Gso6g1878	526	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	175	205	IPR002885	-
	Gso6g1878	526	Pfam	E motif	427	489	IPR046848	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g1878	Gso-Chr6	27161527	27165193	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g1878	8	518	Glycoside Hydrolase	AT3G49170	28.627	1.79e-68	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g1878	-		-	gmx:100780299	1062.37