Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1819 ATGTCAGGGAAAGGGGCGAAGGGGTTGATCACAGGCAAAACCTCCGCCGCCAACAACAAAGACAAGGACAAGAAGAAACCCATCTCGCGTTCTTCACGTGCCGGCCTTCAGTTCCCAGTTGGCCGTATCCACCGGCTTTTGAAGTCAAGGACAACCGCCAACGGTAGAGTTGGGGCCACAGCTGCTGTCTACTCTGCTGCTATCTTGGAGTATCTCACTGCTGAAGTATTGGAGCTGGCGGGGAATGCTAGCAAGGATCTCAAGGTCAAGCGTATTACTCCCCGGCATCTACAGCTAGCAATCCGTGGGGACGAAGAGCTGGATACCCTGATAAAAGGAACAATTGCTGGAGGAGGAGTGATTCCTCACATCCACAAGTCTCTTATCAACAAGTCTTCCAAGGAGTAG 408 0.5221 MSGKGAKGLITGKTSAANNKDKDKKKPISRSSRAGLQFPVGRIHRLLKSRTTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1819 135 Gene3D Histone, subunit A 15 135 IPR009072 GO:0046982
Gso6g1819 135 PANTHER HISTONE H2A 2 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 Pfam C-terminus of histone H2A 105 134 IPR032454 -
Gso6g1819 135 Pfam Core histone H2A/H2B/H3/H4 18 103 IPR007125 GO:0003677
Gso6g1819 135 ProSitePatterns Histone H2A signature. 34 40 IPR032458 -
Gso6g1819 135 SUPERFAMILY Histone-fold 8 112 IPR009072 GO:0046982
Gso6g1819 135 CDD H2A 27 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PRINTS Histone H2A signature 26 48 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PRINTS Histone H2A signature 56 71 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PRINTS Histone H2A signature 71 84 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PRINTS Histone H2A signature 85 99 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PRINTS Histone H2A signature 112 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Gso6g1819 135 PANTHER HISTONE H2A 2 134 - -
Gso6g1819 135 MobiDBLite consensus disorder prediction 1 34 - -
Gso6g1819 135 SMART h2a4 15 135 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1819 Gso-Chr6 22082450 22084592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1819 K11251 - gmx:100500133 253.062