Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1798 ATGGCTTGTCTTGCCCCCTCACACCCACCCCAAACCCTCACACCAAACCAATTCTCACTCACCCACTTCTCCTCCCTCTGCAAACACGGCCGAATCCGCGAAGCCGTGAACTCCCTCACCCAAATGCACTCCCTCAACCTCCATGTGGGCCCCGCCATCTATGGCACCCTCCTCCAGGGCTGCGTCTACGAGCGAGCCCTCCCTCTCGCTCTTCAGCTCCACGCTGATGTCATCAAAAGGGGCCCCACATTTGCCTTAAACGACTTCGTCATTTCCAAGCTCGTCATCCTCTACGCCAAATGCGGCGCCTCCGAACCCGCCACGCGCCTCTTCCGCGACTCGCCGAGCCCGAACGTGTTCTCCTGGGCAGCCATTATCGGCCTCCACACCCGAACGGGCTTCTGCGAAGAAGCCCTTTTCGGTTACATCAAAATGCAGCAAGACGGGTTGCCACCAGACAATTTTGTTCTCCCCAATGTTCTGAAGGCGTGCGGGGTTCTTAAGTGGGTTAGGTTTGGGAAAGGGGTTCACGCGTTTGTTGTGAAGACGATTGGATTGAAGGAATGTGTTTATGTAGCTACTAGTCTGGTTGATATGTATGGGAAATGTGGGGCCGTGGAGGATGCGGGGAAGGTGTTTGATGAAATGTCTGAGAGAAACGACGTCACGTGGAACTCCATGGTTGTGACCTACGCCCAGAACGGGATGAACCAGGAGGCAATTCGGGTGTTTCGGGAGATGAGGCTGCAGGGAGTGGAGGTGACTTTAGTTGCCTTGTCGGGGTTTTTCACGGCGTGCGCGAATTCGGAGGCAGTTGGAGAAGGAAGACAAGGGCATGGACTTGCTGTTGTGGGAGGGTTGGAGTTGGATAATGTTTTGGGGAGCTCGATTATGAACTTCTACTTTAAGGTTGGGCTGATTGAGGAGGCTGAGGTGGTTTTTCGAAACATGGCGGTCAAGGATGTGGTGACGTGGAACTTGGTTGTGGCAGGGTATGCACAGTTTGGAATGGTTGAGAAGGCGCTTGAGATGTGTTGTGTGATGAGAGAAGAGGGTTTGAGGTTTGACTGTGTGACGTTGTCTGCTTTGTTGGCTGTTGCTGCTGATACAAGGGATTTAGTATTGGGTATGAAAGCGCACGCGTATTGCGTTAAGAATGATTTTGAGGGCGATGTGGTTGTTTCGAGTGGGATCATTGATATGTACGCGAAGTGCGGGAGGATGGATTGTGCGAGAAGAGTTTTCAGCTGTGTGAGAAAGAAGGATATTGTGTTGTGGAATACGATGTTGGCTGCTTGTGCTGAGCAAGGTCTGAGTGGCGAGGCCTTGAAGTTGTTCTTTCAGATGCAGCTGGAGAGTGTGCCTCCGAATGTAGTTTCGTGGAATTCTCTGATTTTTGGTTTCTTTAAAAATGGTCAGGTTGCTGAGGCTAGAAACATGTTTGCAGAAATGTGCTCCTCTGGTGTGATGCCTAATTTGATCACATGGACGACGATGATGTCTGGTTTGGTTCAGAATGGTTTTGGTTCTGGTGCTATGATGGTTTTCAGGGAAATGCAGGATGTGGGAATCAGACCTAATAGCATGAGCATAACTTCTGCTCTCTCGGGTTGCACAAGTATGGCATTGTTGAAGCATGGAAGGGCGATTCATGGGTATGTTATGAGGCGTGATCTGTCTCAATCTATTCATATCATAACTTCTATAATGGATATGTATGCTAAATGTGGAAGTTTGGATGGTGCAAAGTGTGTTTTCAAAATGTGTTCAACAAAGGAGTTGTATGTGTATAATGCAATGATATCTGCATATGCATCACATGGTCAAGCTCGAGAAGCCCTTGTGCTTTTTAAACAAATGGAGAAAGAAGGAATAGTGCCTGATCACATAACCCTTACTAGTGTGTTGTCAGCATGCAGCCATGGGGGATTGATGAAGGAAGGCATAAAGGTTTTCAAATATATGGTCTCTGAACTCCAAATGAAACCGAGTGAGGAACATTATGGTTGTTTGGTCAAACTTCTTGCCAACGATGGCCAGTTGGATGAAGCTCTTAGGACAATTTTGACGATGCCAAGCCATCCAGATGCACATATATTAGGATCTCTGCTTACGGCTTGTGGACAAAATAATGATATTGAACTTGCAGATTATATAGCAAAATGGTTGTTGAAATTAGACCCAGATAATTCAGGGAATTATGTGGCTCTTTCGAATGTATATGCAGCTGTAGGAAAATGGGATAAAGTGTCTAATTTAAGGGGTTTAATGAAAGAAAAGGGTCTAAGAAAGATTCCTGGGTGTAGCTGGATTGAAGTTGGACAAGAACTTCATGTATTTATTGCTAGCGATAGATCACACCCCAAGACGGAGGAGATTTATGTGACATTGGATTTGTTGGGATTTGAAATGCATTAA 2418 0.4711 MACLAPSHPPQTLTPNQFSLTHFSSLCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKTEEIYVTLDLLGFEMH* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 379 453 IPR011990 GO:0005515
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 424 458 IPR002885 -
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 595 628 IPR002885 -
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Gso6g1798 805 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Gso6g1798 805 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 503 792 - -
Gso6g1798 805 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 320 366 - -
Gso6g1798 805 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 348 507 - -
Gso6g1798 805 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 319 - -
Gso6g1798 805 Pfam E motif 711 772 IPR046848 -
Gso6g1798 805 PANTHER OS07G0578800 PROTEIN-RELATED 503 792 IPR045215 GO:0003723|GO:0009451
Gso6g1798 805 PANTHER OS07G0578800 PROTEIN-RELATED 348 507 IPR045215 GO:0003723|GO:0009451
Gso6g1798 805 PANTHER OS07G0578800 PROTEIN-RELATED 21 319 IPR045215 GO:0003723|GO:0009451
Gso6g1798 805 PANTHER OS07G0578800 PROTEIN-RELATED 320 366 IPR045215 GO:0003723|GO:0009451
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 564 792 IPR011990 GO:0005515
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 21 178 IPR011990 GO:0005515
Gso6g1798 805 Pfam PPR repeat family 456 504 IPR002885 -
Gso6g1798 805 Pfam PPR repeat family 595 640 IPR002885 -
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Gso6g1798 805 SUPERFAMILY TPR-like 446 749 IPR011990 GO:0005515
Gso6g1798 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 454 551 IPR011990 GO:0005515
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 179 277 IPR011990 GO:0005515
Gso6g1798 805 Gene3D Tetratricopeptide repeat domain 281 378 IPR011990 GO:0005515
Gso6g1798 805 Pfam PPR repeat 323 353 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 222 252 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 120 150 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 567 588 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 194 220 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 397 422 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 295 320 IPR002885 -
Gso6g1798 805 Pfam PPR repeat 424 451 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1798 Gso-Chr6 21175050 21178702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1798 125 804 Glycoside Hydrolase AT3G49170 30.992 5.40e-109 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1798 - - gmx:100806010 1622.06