Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1786 ATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGACGCTCTCACAAGGCGACAATGGGTCCGAGAAGAAGACTTGGCAAAAGATCTCAAATTACACACAAAACAGCTTCGCCGAACTCTCCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGCTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTAATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGTGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGATGAGTATATTAAAGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGCTAGTAAACAAGAATTGCCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGATGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTATTGGAAATGAAAATTACAAGGTCGATTTGAATGTTGAAGCTGATGATACTCCAGCTGATGACGATGAAGAAGTGGACTGGGAGGAAGGTTGA 1410 0.4199 MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKMYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVENDKFVAQEGGDGDENARRRRHEKLKDMLQKMEAQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSGDSKMSQLGYNGAPMPYSGDTKVVVDFNGTEDIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEVKEEIKMDGTSTSSSAQYLDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEAASKQELPNTLTANDPSSSASNRQVGMKSKLEEDDDGTEWEEAPVAGIGNENYKVDLNVEADDTPADDDEEVDWEEG* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1786 469 Pfam TFIIE alpha subunit 39 96 IPR024550 -
Gso6g1786 469 Coils Coil 218 238 - -
Gso6g1786 469 MobiDBLite consensus disorder prediction 454 469 - -
Gso6g1786 469 MobiDBLite consensus disorder prediction 336 366 - -
Gso6g1786 469 MobiDBLite consensus disorder prediction 400 469 - -
Gso6g1786 469 Coils Coil 58 78 - -
Gso6g1786 469 MobiDBLite consensus disorder prediction 400 418 - -
Gso6g1786 469 SMART tfiie3 37 208 IPR002853 GO:0006367
Gso6g1786 469 ProSiteProfiles TFE/IIEalpha-type HTH domain profile. 5 137 IPR017919 -
Gso6g1786 469 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 8 452 IPR039997 -
Gso6g1786 469 SUPERFAMILY Zinc beta-ribbon 150 198 - -
Gso6g1786 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1786 Gso-Chr6 20711997 20722379 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1786 K03136 - gmx:100779773 931.398