Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1768 ATGTCAAAGCTTCAGGTGAATAAACTGAACCAACTAAGAGAAATTTGCGCAACATTCTACATGGATTCGGATGGCAGCCTAACGATTTTGGAGCTAGCTGCGCTCCTTCGGTCAATAGGGCTGAATCCCTCGGGGGATGAAATCCATGCCTTGTTGGCCAACATGGACTCAAATGGCAATGGCTTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTGCATGACATAAGTGCAGAGATTTTGTTGAAACAAGAAATGCTATTTGGGGTGTTCAAGTGTTTTGACCGTGATGGGAATGGTTACATAACGGCAGCGGAGTTAGCAGGGGCAATGGCCAAAATGGGTCAACCCGTTACATATAGAGAGCTCACAGAGATGATCACAGAGGCTGACACAGATGGTGATGGTGTGATTAGTTTCAATGAATTTGTCACTGTGATGGGTAGGTCAGCCACTCACTTCTTAGGCCTTGCATTGTTGTAA 483 0.4513 MSKLQVNKLNQLREICATFYMDSDGSLTILELAALLRSIGLNPSGDEIHALLANMDSNGNGFVEFDELVDAILHDISAEILLKQEMLFGVFKCFDRDGNGYITAAELAGAMAKMGQPVTYRELTEMITEADTDGDGVISFNEFVTVMGRSATHFLGLALL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1768 160 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Gso6g1768 160 CDD EFh 86 147 IPR002048 GO:0005509
Gso6g1768 160 Gene3D - 1 152 - -
Gso6g1768 160 Pfam EF-hand domain pair 31 71 IPR002048 GO:0005509
Gso6g1768 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Gso6g1768 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Gso6g1768 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Gso6g1768 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Gso6g1768 160 SUPERFAMILY EF-hand 5 147 IPR011992 -
Gso6g1768 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Gso6g1768 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Gso6g1768 160 CDD EFh 11 72 IPR002048 GO:0005509
Gso6g1768 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Gso6g1768 160 SMART efh_1 11 39 IPR002048 GO:0005509
Gso6g1768 160 SMART efh_1 86 114 IPR002048 GO:0005509
Gso6g1768 160 SMART efh_1 47 75 IPR002048 GO:0005509
Gso6g1768 160 SMART efh_1 122 150 IPR002048 GO:0005509
Gso6g1768 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1768 Gso-Chr6 20395925 20396407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1768 7 159 EF-hand Containing Proteins AT1G18530 67.974 2.30e-75 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1768 K13448 - gmx:100790108 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1768 6 20395925 20396407 Gso6g1768 6 20395925 20396407 ECH