Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1753 ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACACCGCCAAGAGCGGCGGCGCGGCCTTCTGCTCCGTCCTGTGGGACCAGAAAGCGAAGCACCTGATCACTGCGTCCTCCTCCGACGTCGCCATCTGCATCCACGACTCCCTTTTCCCCTCCCTCGCTCCGAAAACCCTCCGCCACCACCGCGATGGCGTCACCGCCCTGGCCCTCAGCCCTAATTCTACTTGCCTCGCCTCCGGATCCGTCGACCACTCCGTCAAGCTCTACAAGTATCCCGGTGGAGAATTCGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCATTTAACAAATCTGGAAGCATGCTGGCAGCGGCTGGTGATGATGAGGGTATCAAGCTTATAAACACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACATAAAGGGTCTATCACTGGCTTGGCTTTTGACCCTAATGGCGAATACTTAGCGTCCCTGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGGCTGGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGTTGAAAAATGATGTAGTAATGTATGATAGGGACACTGCCGAGAAGGTGTTATCTTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGAAAGTACATTGCTTCCTCTGGTTTAGATAGGCAGGTTCTGATTTGGGATGTTGATAGGAAGCAGGATATTGATAGACAGAAGTTTGATGAGAGAGTGTGTTGCATGGCGTGGAAGCCGACTGGGAATGCATTGGCTGTTATTGATATTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACCGAGGATATACCTGTGAAGAGTAAAAGCAATGGGGTTGTTTATTTTGATGAGGAGGATCCTGAAAATAGTGCAAGTGAAAACTCGAGTGATGTGGGTGGAAATAGTAACCAGGAGTCTGAGCCACCAAGCAGGAAAAGATCCCGTAAACAGTCTCTGAGTGAGGAAAATTCTGGTGAGGATGGAGGTGAGGAAATTGTATCATATCCAAAGGTTGATACTAACAAGAAACGAAATCGACCAAGCAAGGAAAATTTGGATAGTGTGAATATGGGATTTAGAGGCACCATGGTAACATCCAAGGCAAAGATGCAGGAGCCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCGTTTCTTATGCTACAATATGCTTGGATGTATAACCTCTATTGAGCATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCATTGAATGAGAGTGGGAGCATATTTGCAAATCCTTGTAAGGGGGAGAATAATATGAGCACCCTTATGTATCGTCCATTTAGTAGCTGGGCAAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTTCTGCTTGGGTTGCAGCGGTAACTAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGTTTGCAGAGAGACGTGTTTTCACTAGATGGGCCAGTGGTGACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATGGCCTTCTCTCAAATGATCAGAAGCTAGAGTTTATGGTATTTAATATTCCTCGTGGGACCCTACTTCTTCAAGGTCGCTTGCCACTATCCCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCAAATTTGGGGGCAGATGGATTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACTGGGTTGAATGCAAGCAAGGTATTTTGCGTGGTATGCAAAAAGCCCGAAGACTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACCCCGTTGAATCTTTCGTTTCCTCTTGCTTCCTCTGACTTGGGGGGATCTGAAGCCCATGAAAAGGAGTTTATGATGAACAACTTGCGTCTCTATGAGATTCAGAGAACAATGGACGAAATGGCTTCTGTTGGTCTGGATACTACTTCACTTGATGATGATGCTTTCAATTTCGAAGCAGCACAAGATAAATGCATACTGAGGCTCATAGCAGCATGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTTGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAGTAAAACTTGTTACTGCTATGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTAGAGGAAAGGCTACTTGAAGAAGCCAAAAAAGCTATGGAAACCAACATCAAAGAAAATAGTGTTGCACCTGTTACAGCTGATGCTCTTCCTAACAGAAGCAAGGCCCCAACTCACACTGAAGCATTAAATGCAGTTACCATGTCATCATCTCCAAAATTATCTGTTCCGTCATTCCTAAGGAAAGACAAAACACAAGAGAGAGCTAAAGCTGGCACAAGCAAAACTGCAATGGTAAATGAAAATTTGAAGGTAAAGCAGACAGGGGAGGAAACAAGTGACAAGGTGGGGAAGGTTGTGCAACAAACTTCTCATCCGTATGATCCCTCTACGAAGTCCTCAAATAAGAATGGACTTAACAAGTCAGAGACTAGTTTGGGACAATCAAATCGTCCTTCCAATCCATTTTTGAAGTCAGAAACTAGTTTGGAACAATCAAATCGTCCGTCCAATCCATTTTTGAAGGCTATTATCAAGTGA 2919 0.4484 MKVRSMKLKEAHTAKSGGAAFCSVLWDQKAKHLITASSSDVAICIHDSLFPSLAPKTLRHHRDGVTALALSPNSTCLASGSVDHSVKLYKYPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDSTGTVILWELQSGKIIHNLKGIAPDTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVLSLRGDHIQPICFLCWSPNGKYIASSGLDRQVLIWDVDRKQDIDRQKFDERVCCMAWKPTGNALAVIDIMGKYGIWDNVIPSSMKSPTEDIPVKSKSNGVVYFDEEDPENSASENSSDVGGNSNQESEPPSRKRSRKQSLSEENSGEDGGEEIVSYPKVDTNKKRNRPSKENLDSVNMGFRGTMVTSKAKMQEPFQPGSTPVQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGSIFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGSAWVAAVTSFNYLRIFSEGGLQRDVFSLDGPVVTASGFKDKLAVVTHATDGLLSNDQKLEFMVFNIPRGTLLLQGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSKFGGRWIPLFSATKEKSDENYWVTGLNASKVFCVVCKKPEDFPQVMPKPVLTPLNLSFPLASSDLGGSEAHEKEFMMNNLRLYEIQRTMDEMASVGLDTTSLDDDAFNFEAAQDKCILRLIAACCNSDKLVRATELVKLLTLEKSMRGAVKLVTAMKLPNLAERFSSILEERLLEEAKKAMETNIKENSVAPVTADALPNRSKAPTHTEALNAVTMSSSPKLSVPSFLRKDKTQERAKAGTSKTAMVNENLKVKQTGEETSDKVGKVVQQTSHPYDPSTKSSNKNGLNKSETSLGQSNRPSNPFLKSETSLEQSNRPSNPFLKAIIK* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Gso6g1753 972 Pfam WD domain, G-beta repeat 232 266 IPR001680 GO:0005515
Gso6g1753 972 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Gso6g1753 972 MobiDBLite consensus disorder prediction 359 374 - -
Gso6g1753 972 MobiDBLite consensus disorder prediction 343 358 - -
Gso6g1753 972 MobiDBLite consensus disorder prediction 335 408 - -
Gso6g1753 972 Pfam Minichromosome loss protein, Mcl1, middle region 423 705 IPR022100 -
Gso6g1753 972 Gene3D - 195 322 IPR015943 GO:0005515
Gso6g1753 972 MobiDBLite consensus disorder prediction 907 965 - -
Gso6g1753 972 CDD WD40 22 310 - -
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Gso6g1753 972 MobiDBLite consensus disorder prediction 855 972 - -
Gso6g1753 972 MobiDBLite consensus disorder prediction 855 869 - -
Gso6g1753 972 MobiDBLite consensus disorder prediction 383 401 - -
Gso6g1753 972 SMART WD40_4 135 174 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 226 266 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 1 47 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 93 132 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 51 90 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 269 307 IPR001680 GO:0005515
Gso6g1753 972 SMART WD40_4 177 223 IPR001680 GO:0005515
Gso6g1753 972 Gene3D - 2 194 IPR015943 GO:0005515
Gso6g1753 972 MobiDBLite consensus disorder prediction 884 899 - -
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Gso6g1753 972 Pfam Anaphase-promoting complex subunit 4 WD40 domain 144 185 IPR024977 -
Gso6g1753 972 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 969 - -
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Gso6g1753 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Gso6g1753 972 SUPERFAMILY WD40 repeat-like 20 307 IPR036322 GO:0005515
Gso6g1753 972 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1753 Gso-Chr6 19874717 19880391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1753 4 272 Miscellaneous Gene Families AT5G08390 23.443 1.85e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1753 K11274 - gmx:100818807 1907.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1753 6 19874717 19880391 Gso6g1753 6 19874717 19880391 ECH