Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1746 ATGCGGCGGCGCGCCGCCGAGTTTCGGCGCCCGGTTCGGCGGCGGTTCTCCCATTGGATCTGGTTGCTTCTCGGCGCGTTCTCTCTCGCCGGTTTGGTTTTGTTCTTTGTGCAGTACAATCATAGCGAAGATCGGGTCCATCACCCCCTTCTGGAGAGAAATGCTAAAGTTGAACATTTTGCCAAGAGATATAATTTTACTGAGGAAATTTTAAGTGCAACATCCTTTTCACGGCAGTTAGCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTTGCCTGGGAGCTTAGCTCAAAGATTAGAAGTTGTCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTGACCATGGAGGAAGCCGAGCCAATTATTAAAAGCTTGTCTTCTCTAATTTTCAAGGCACAAGATGTTCATTATGACATTGCAACCACTATAGCAACAATGAAATCACATATTCAAGCACTTGAAGAGCGTGCAAATACAGCGACAATTCAAAGTACTGTGTTTGCTCAAATATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTAAATGTGAAACTTATGGCTGATTGGCTGAAGATGCCATCCCTGCAAAAACTCTCACATGAGAGTAGAATCTCCCCACGGCTCACAGATAATAATCTAAATCATTTCTGCATTTTTTCAGATAATGTACTGGCTACATCTGTAGTTGTTAACTCAACTGTCATGAATGCTGACCATCCAAAACAGTTAGTCTTTCACATTGTTACTGATGGTATCAATTATGGAGCAATGCAAGCATGGTTCTTCAGTAATGACTTTAAAGGGGCTACCTTAGAGGTTCAGAATATTGAGAAGTTTCATTGGTTGAATGAATCTTATTCTCCAATTGTCAAACAACTACGCATTCCAGAATCACGAGCCTTTTATTTTGGACCTTATCAAGGTGCAAATGTTGAGCCAAAATTGCAAAACCCCAAGTTTTTGTCTTTACTAAATCATCTTCGGTTTTACATCCCTGAGATTTATCCACTACTTGAGAAGGTTGTTTTCCTCGATGATGATGTTGTTGTTCAGAAGGACCTAACCCCACTTTTCTCACTGGATTTGCATGGAAATGTGAATGGAGCTGTTGAAACTTGTCTAGAAGCCTTTCATAGGTACTACAAGTATCTCAACTTCTCAAATTCAATTATAAGCTCAAAGTTTGATCCACAAGCATGTGGATGGGCACTTGGTATGAATGTTTTTGACTTGGTTGCATGGAGGAAAGCAAATGTGACTGCAAGGTATCATTATTGGCAGGAGCAGAATGCTGATGGGACACTCTGGAAACTCGGTACGCTTCCACCTGCTCTTTTAAGTTTTTATGGTTTGACAGAACCACTTGACAGAAGATGGCATGTTTTAGGGTTGGGTTATGACCTAAACATTGACAACCGCCTCATTGAAAGTGCAGCAGTTATTCATTTTAATGGGAACATGAAACCATGGCTGAAGTTAGCTATAGGCAGGTATAAGCCATTATGGCACAAGTACAAAAACCAAAGTCACCCTCATCTACAAGATTGTGCCGCAGGTTAA 1605 0.4168 MRRRAAEFRRPVRRRFSHWIWLLLGAFSLAGLVLFFVQYNHSEDRVHHPLLERNAKVEHFAKRYNFTEEILSATSFSRQLAEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTMEEAEPIIKSLSSLIFKAQDVHYDIATTIATMKSHIQALEERANTATIQSTVFAQISAEALPKSLHCLNVKLMADWLKMPSLQKLSHESRISPRLTDNNLNHFCIFSDNVLATSVVVNSTVMNADHPKQLVFHIVTDGINYGAMQAWFFSNDFKGATLEVQNIEKFHWLNESYSPIVKQLRIPESRAFYFGPYQGANVEPKLQNPKFLSLLNHLRFYIPEIYPLLEKVVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWALGMNVFDLVAWRKANVTARYHYWQEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWHKYKNQSHPHLQDCAAG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1746 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Gso6g1746 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
Gso6g1746 534 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
Gso6g1746 534 CDD GT8_like_1 230 520 - -
Gso6g1746 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 531 IPR029044 -
Gso6g1746 534 Coils Coil 157 177 - -
Gso6g1746 534 PANTHER HEXOSYLTRANSFERASE 3 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1746 Gso-Chr6 19592684 19597080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1746 1 531 Glycosyltransferase AT2G20810 54.664 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1746 K13648 - gmx:100817381 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1746 6 19592684 19597080 Gso6g1746 6 19592684 19597080 ECH