LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g1734	ATGGATAACAGTAGCTCAGAACAGACCGTGCAAGATGGCAAACTCTACAGAAACCTCAATTCTCTCATCGTCGCTCATCTTCGCGACAACAGTCTCACTCAGGCTGCAAGTGCTGTTGCTTCAGCAACCATGACTCCACTGAATGTAGAAGCCCCTCCTAACAGGCTTCTCGACCTGGTCGCTAAGGGTCTTGCAGTGGAAAAGGGCGACATCACAAGAGGCACTGGTTTCACTGCTACACTGCCTCTGCCTCACACAACAGCTATTGATTTCAGCTCTGTGCCTGATGTGAAAGGTTCATCAAAGAGCTTCCCAAAGCATGAAACGCGACACCTTTCAGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGATTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGTTATTTGAGGTTTCGAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTTTTTTGATATTTCAAAAACAAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTTCATCCATCTGGAGACTTTCTGCTGGCAGTGTTATCTGTCGGCAAATATCCCAGAGACTAGCCCCAGTGGAGCCATAAACCAGATCAGATATTCTTGTACAGGTTCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCAAAGGTTTGTTCTCTCTTGCGGGAAGGATTCTACCTTAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAGTCAAACAATATCTGGGTGCTATACATACCCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTGAGCAATGAGATCGTTATCTGGGATGCGATGACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCACCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAAACTGTATAA	1191	0.4416	MDNSSSEQTVQDGKLYRNLNSLIVAHLRDNSLTQAASAVASATMTPLNVEAPPNRLLDLVAKGLAVEKGDITRGTGFTATLPLPHTTAIDFSSVPDVKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGFLIFQKQMQREHTGLSRTHTMFDLYLFIHLETFCWQCYLSANIPETSPSGAINQIRYSCTGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDQRFVLSCGKDSTLKLWEVGSGRLVKQYLGAIHTQLRCQAIFNETEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV*	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g1734	396	SUPERFAMILY	WD40 repeat-like	105	393	IPR036322	GO:0005515
	Gso6g1734	396	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	229	261	-	-
	Gso6g1734	396	SMART	WD40_4	220	261	IPR001680	GO:0005515
	Gso6g1734	396	SMART	WD40_4	264	305	IPR001680	GO:0005515
	Gso6g1734	396	SMART	WD40_4	353	393	IPR001680	GO:0005515
	Gso6g1734	396	SMART	WD40_4	105	144	IPR001680	GO:0005515
	Gso6g1734	396	Gene3D	-	72	188	IPR015943	GO:0005515
	Gso6g1734	396	ProSiteProfiles	Trp-Asp (WD) repeats profile.	229	270	IPR001680	GO:0005515
	Gso6g1734	396	Pfam	WD domain, G-beta repeat	266	304	IPR001680	GO:0005515
	Gso6g1734	396	Pfam	WD domain, G-beta repeat	109	143	IPR001680	GO:0005515
	Gso6g1734	396	Pfam	WD domain, G-beta repeat	234	261	IPR001680	GO:0005515
	Gso6g1734	396	Gene3D	-	219	395	IPR015943	GO:0005515
	Gso6g1734	396	ProSiteProfiles	Trp-Asp (WD) repeats profile.	112	153	IPR001680	GO:0005515
	Gso6g1734	396	PANTHER	CLEAVAGE STIMULATION FACTOR SUBUNIT 1	6	184	IPR044633	GO:0005848\|GO:0031124
	Gso6g1734	396	PANTHER	CLEAVAGE STIMULATION FACTOR SUBUNIT 1	218	395	IPR044633	GO:0005848\|GO:0031124
	Gso6g1734	396	ProSitePatterns	Trp-Asp (WD) repeats signature.	292	306	IPR019775	-
	Gso6g1734	396	ProSiteProfiles	Trp-Asp (WD) repeats profile.	285	314	IPR001680	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g1734	245	392	Miscellaneous Gene Families	AT5G08390	22.148	9.80e-08	52.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g1734	K14406		-	gmx:100809908	713.375

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso6g1734	6	19301623	19306631	Gso6g1734	6	19301623	19306631	ECH