Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1713 ATGTTGTTTCAGATTCCTCGCCTCACCAACTCTCTCAGAGATCCCTTCGACGTGGACCAGTACTATCTTCATCGCAAAACCATTCTCCACAACCAAAAACCTAGCAATTCCGCAAGTTCACTCGATGAATCGGAACTGGCGCGGAAGATTGTGCACGGGTGGGAAAAAGCTTCGTCGGACGTGCGGCAGGCCTACAAGCAGTTTATAGGAGCGGTGGTGGACTTGGTTGACGGAGAAACGCGCTCCGAGGAGTTCCACGAGGTGGCGCTGACTATGTACCGGCTATTTGGCAGGCCAATGGAGGAGGAGGATCACATTGATAAAATTATTTCAGATAAAAAGTTAGAATTACAAAAACTTGTTGGACGCACAGTTACTGATGCCAAGTTGAGGCAAGTTGCATCTCTAGCACAGCGACTTTTAAATTTGCAGCCGAGCAATAAAAACTCTGCCATTTCTTTTGAAAGAAATCTAGATGCTAACGAGGATTTAGAATTTGGAGCTGATTTGTTTTTTCAAGCACCAGCTCGTTTCTTGGTTGATGTATCCTTAGATGATGGGGATATGATGGATTTTGAAAGCACTGTTTCATTAGAATTTCACAAAGAACAGTATGGCCATAATGTCCCAACAGATCATTCTGTTGTTAACAGGGAAAAGTTCAACCTGACTTGGTTACGAGATGCATGTGATAAAATAGTTAAGAATTGTAATTCACAATTATCCCAAGATGAATTGGCAATGGCCATTTGTCGGGTTCTTTATTCCGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGCGATAGTGCATTTGAAACTGTGCAAATTTTTTTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTATTGGTATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGAAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGGGGAGTAGAACATGCTGGTGATGGTGAATTGTCTGCACTGGATTTCTCATCTTTACATCAAGCAAGTGAGAGGAAAAAAATGTTTGATGAGATGATTGGTTCTGGAGATAAGTTCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTATGAAGAGGTTAATATTCCCCCAAAACCAACTGCACCATTGAAACCTGGAGAAAAGCTGATTGAAATCAGGGAGTTAGATGACTTTGCACAAGCTGCGTTCCGTGGGTACAAATCACTTAATCGCATTCAGAGCAGGATTTTTCCAACTGTTTATGGAACTAATGAGAATATTTTAGTGTGTGCTCCCACAGGAGCGGGCAAAACTAACATAGCTATGGTTTCCATTTTACACGAGATTGGACAACACTTTAGGGATGGCTACTTGCATAAAGAAGAATTTAAGATAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTTACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTCCGAGAGCTTACTGGAGATATGCAGCTCTCTAAAAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACACGCAAGAGCAGTGACATGTCACTGTCAATGCTGGTAAAGCTCTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCTGTGATAGAGGCTCTAGTTGCCAGGACCCTACGGCAGGTGGAATCTACTCAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACTTGGAGGTTGCACAATTTCTCAGGGTAAATCCAGACACGGGTCTTTTCTTCTTTGATTCTAGTTATCGTCCTGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAATTGTTGAATGATATATGCTATACAAAGATTGCTGATTCTCTTAGGCAAGGCCATCAGGCAATGGTGTTTGTCCATTCACGAAAGGACACTGCAAAGACAGCTGATAAACTGGTTGAACTAGCACGAAGGAATGAGGATTTTGAACTTTTTAGTAATAATACACATCCACAATATACCTTCATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTGCAACTTTTTGAATATGGTGTGGGTGTACATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGACTTTTCTCCGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCATGGGGTGTCAATCTACCTGCACACACAGTTGTCATTAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTGGGTATGCTTGACGTTATGCAGATATTTGGGCGAGCTGGAAGACCTCAGTTTGACAAAAGCGGTGAAGGTATCATAATTACATCTCATGACAAACTAGCATATTATCTGCGACTGCTGACAAGCCAACTCCCTATAGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACATATCTTTTCATAAGGATGAGGATGAATCCTTTAGCATACGGTATTGGGTGGGATGAGGTGATGGTGGATCCTGCTTTGAGTTCTAAGCAAAGATCTCTTGTAATTGATGCTGCACGTGCACTTGATAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCGAGCCATTTTTACATTCAATATTCCAGTGTTGAAACGTACAATGAAATGTTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCATCTGAATTTGAGAATATTGCTGTTCGGGAAGAAGAACAGAATGAGCTAGAGATGTTGGCACGCACATCATGTCCATTAGAAATTAAGGGTGGTCCTTCCAATAAACATGGAAAGATTTCCATTTTGATTCAGTTGTACATATCTCGAGGTTCTATAGATTCTTTTTCTTTAGTATCTGATGCTTCATATATAAGTGCAAGCTTGGCTAGAATAACACGGGCTTTATTTGAGATTTGCTTACGAAGAGGCTGGTGTGAGATGTCTTTGTTCATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCGCATCAACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAGCTTGAAGAACGTGGGGCTGACCTAGACCGCTTGTATGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGCGCCTGGAGGAAGGTTGGTCAAGCAACACCTAGGGTATTTTCCATCACTTCAGTTATCAGCAACTGTGAGTCCAATTACCAGAACTGTGTTGAAGGTTGATCTGGTCATTACGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGACCACATCTACCACTCTGAACTCTTTACGCTGACAAAGCGAATGGCTAGGGGTGAACCTTACAAGCTTTCCTTCACCGTACCAATATTTGAACCACATCCACCACAATATTACATTCATGCTATTTCTGATTCTTGGCTTCATGCCGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGTACTGCTCACACAGAACTCCTTGATTTAAAACCGCTTCCCATGTCTTCCCTTGGCAACAGTACTTATGAAGCATTATATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTTCATGTCCTGTATCACACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCCATGCTTCGTCTTTTTAATACTCAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCTATTGTCAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACTGGAGACTATACTCCTGATTTGACGGCTCTCTTGTCGGCCAATATCATCATATCTACTCCTGAAAAGTGGGATGGAATAAGTCGTAATTGGCATAGCCGTAGCTATGTCACAAAGGTTGGACTTATGATATTGGATGAGATTCACTTATTGGGGGCTGATCGTGGACCCATTCTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCCCAAACAGAACGTGCAGTACGGTTTGTAGGTCTTTCTACAGCTCTGGCTAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCCCTGGAAGTTCATATTCAGGGTTATCCTGGAAAATATTACTGCCCAAGGATGAATAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCATCAGATGAACAATCCAGACAATTCCTTAATTTGCCAGAAGAAACCCTACAGATGGTTCTGTCTCAAGTCTCTGACCTAAACCTAAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGGTTGAGGAACTTTTTGCAAACAACAAAATTCAGATATTGGTTTGTACCAGCACCTTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGACGGCCTCAATTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAGATGCAGTCCATTATCTTACATGGACTTACTTATTTCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGGATGCTGAATCTGAATTTCTAAATACATATTTGTCCAGCCTAGTACAGACCACATTTGAGGATTTGGAAGACAGTGGATGCATAAAGATGGATGAAGACAAGGTGGAGCCCATGATGTTGGGTACAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAGTCTTTTTGCATATTTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTCTAGATGACCCTCACATCAAAGCACTTCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCAGTATTAGATCAGAGTATACGCGTAATTCAGGCCATGATTGATATTTGTGCAAACAGTGGGTGGCTTTCAAGCTCAATTACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGTTTGTGGTTTGACAAGGAATCTTCCTTATGGATGCTGCCATGCATGAATACAGATCTGATAAGTTCACTAAGCAGAAGAGGAATTTCTAGTGTACAGGAATTACTAGACATTCCAAAAGCAGCATTGCAGACTGTAACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTTCAGCATTTCCCTCATGTTAAAATGAAATTAAAAGTTCAGAGGAAGGACACTGATGGTGACAGGTCTCGCATATTATCTGTTAGATTAGAGAAGACCAATTCTAGACGACACTCTTCTAGAGCATTTGTACCTCGATTTCCAAAGATAAAAGAGGAACAATGGTGGTTGGTTCTTGGTAATACCTCTACGTCTGAGCTATATGCTTTGAAAAGAGTTTCTGTTTCAGATCACTTAGTTACCTCAATGAAGTTGCCTCTGACTCCAGCTAATCTTCAGGGCGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAGAACTTGATGTATGTTAA 6267 0.4091 MLFQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPSNSASSLDESELARKIVHGWEKASSDVRQAYKQFIGAVVDLVDGETRSEEFHEVALTMYRLFGRPMEEEDHIDKIISDKKLELQKLVGRTVTDAKLRQVASLAQRLLNLQPSNKNSAISFERNLDANEDLEFGADLFFQAPARFLVDVSLDDGDMMDFESTVSLEFHKEQYGHNVPTDHSVVNREKFNLTWLRDACDKIVKNCNSQLSQDELAMAICRVLYSEKPGEEIAGDLLDLVGDSAFETVQIFLLHRKEIVDSIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGVEHAGDGELSALDFSSLHQASERKKMFDEMIGSGDKFESIAVTALPEGTVRKHFKGYEEVNIPPKPTAPLKPGEKLIEIRELDDFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMVSILHEIGQHFRDGYLHKEEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYTKIADSLRQGHQAMVFVHSRKDTAKTADKLVELARRNEDFELFSNNTHPQYTFMKKEVIKSRNKDLVQLFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMVDPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLVSDASYISASLARITRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLYEMEEKDIGALIRYAPGGRLVKQHLGYFPSLQLSATVSPITRTVLKVDLVITPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEARTAHTELLDLKPLPMSSLGNSTYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDLTALLSANIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEETLQMVLSQVSDLNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLEDAESEFLNTYLSSLVQTTFEDLEDSGCIKMDEDKVEPMMLGTIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKALLLFQAHFSQLELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFDKESSLWMLPCMNTDLISSLSRRGISSVQELLDIPKAALQTVTANFPASRLYQDLQHFPHVKMKLKVQRKDTDGDRSRILSVRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSVSDHLVTSMKLPLTPANLQGVKLILVSDCYIGFEQEHSIEELDVC* 2089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1713 2088 Gene3D C2 domain 1142 1251 IPR035892 -
Gso6g1713 2088 SMART ultradead3 436 647 IPR014001 -
Gso6g1713 2088 SMART ultradead3 1284 1488 IPR014001 -
Gso6g1713 2088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 847 IPR027417 -
Gso6g1713 2088 CDD DEXHc_ASCC3_1 439 635 - -
Gso6g1713 2088 MobiDBLite consensus disorder prediction 308 348 - -
Gso6g1713 2088 CDD DEXHc_ASCC3_2 1287 1475 - -
Gso6g1713 2088 Gene3D - 1480 1684 IPR027417 -
Gso6g1713 2088 SUPERFAMILY "Winged helix" DNA-binding domain 1683 1783 IPR036390 -
Gso6g1713 2088 SUPERFAMILY Sec63 N-terminal domain-like 968 1143 - -
Gso6g1713 2088 Gene3D - 640 842 IPR027417 -
Gso6g1713 2088 Pfam Helicase conserved C-terminal domain 1547 1653 IPR001650 -
Gso6g1713 2088 Pfam Helicase conserved C-terminal domain 699 817 IPR001650 -
Gso6g1713 2088 MobiDBLite consensus disorder prediction 327 348 - -
Gso6g1713 2088 Coils Coil 1101 1121 - -
Gso6g1713 2088 PIRSF BRR2 17 2087 - -
Gso6g1713 2088 Gene3D - 1779 1915 - -
Gso6g1713 2088 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 470 2084 - -
Gso6g1713 2088 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 424 469 - -
Gso6g1713 2088 PANTHER SEC63 DOMAIN-CONTAINING 470 2084 - -
Gso6g1713 2088 PANTHER SEC63 DOMAIN-CONTAINING 424 469 - -
Gso6g1713 2088 Pfam Sec63 Brl domain 940 1246 IPR004179 -
Gso6g1713 2088 Pfam Sec63 Brl domain 1771 2082 IPR004179 -
Gso6g1713 2088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 624 IPR027417 -
Gso6g1713 2088 Pfam DEAD/DEAH box helicase 1290 1454 IPR011545 GO:0003676|GO:0005524
Gso6g1713 2088 Pfam DEAD/DEAH box helicase 442 615 IPR011545 GO:0003676|GO:0005524
Gso6g1713 2088 Gene3D C2 domain 1974 2087 IPR035892 -
Gso6g1713 2088 MobiDBLite consensus disorder prediction 308 326 - -
Gso6g1713 2088 CDD SF2_C_Ski2 639 830 - -
Gso6g1713 2088 CDD SF2_C_Ski2 1479 1667 - -
Gso6g1713 2088 Gene3D - 1253 1479 IPR027417 -
Gso6g1713 2088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 864 IPR001650 -
Gso6g1713 2088 SUPERFAMILY E set domains 1992 2082 IPR014756 -
Gso6g1713 2088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1526 1712 IPR001650 -
Gso6g1713 2088 Gene3D - 1685 1778 IPR036388 -
Gso6g1713 2088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1474 1683 IPR027417 -
Gso6g1713 2088 SUPERFAMILY Sec63 N-terminal domain-like 1804 1958 - -
Gso6g1713 2088 SUPERFAMILY "Winged helix" DNA-binding domain 847 952 IPR036390 -
Gso6g1713 2088 Gene3D - 428 639 IPR027417 -
Gso6g1713 2088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 449 631 IPR014001 -
Gso6g1713 2088 Gene3D - 1085 1139 - -
Gso6g1713 2088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1174 1472 IPR027417 -
Gso6g1713 2088 SMART AAA_5 1302 1473 IPR003593 -
Gso6g1713 2088 SMART AAA_5 454 635 IPR003593 -
Gso6g1713 2088 Gene3D - 849 940 IPR036388 -
Gso6g1713 2088 Gene3D - 941 1083 - -
Gso6g1713 2088 SMART helicmild6 727 819 IPR001650 -
Gso6g1713 2088 SMART helicmild6 1555 1655 IPR001650 -
Gso6g1713 2088 SMART Sec63_2 940 1248 IPR004179 -
Gso6g1713 2088 SMART Sec63_2 1771 2084 IPR004179 -
Gso6g1713 2088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1297 1472 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1713 Gso-Chr6 18708265 18769851 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1713 K18663 - gmx:100811503 4143.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1713 6 18708265 18769851 Gso6g1713 6 18708265 18769851 ECH