Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1705 ATGGGGAGTGACGACAATCTAAAGACATGGGTATCAGATAAGTTGATGTCTCTACTGGGATATTCTCAGCCCACAGTTGTCCAGTACATGATTGGACTATCCAAGCAAGCTACTTCTCCAGCTGATTTGGTGGGCAAACTAGTGGAGTTTGGGATCTCGTCAATGGACACTCATGCATTTGCGGAAGAAATTTACTCAAGAGTTCCTCGTAGATCATCTGGTATAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGCGAGGAAGCAGAAGACTTACTCAATTTTGAAGGCTGATGACGATAGTGACGATGACTATGTAGATAAATCTTCAGTAACTACTGCATCATCTAGAAGCTCTGACAAGCATAAAAAACGTTTCAGGAAGAAAACTGAAGTTCAAGATGATCAAGATGATGAGGTAATTTTGAGAAAGGAAAAGGAGAGACAAGTTAAGAGAAGAACTTCCCCTGATGAAGATAGTGATTCTGAGTCCGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGCGAGAAAGAGATGCAGCAGGGACACGGAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAGGCAATTCGAAGATCTAAAGCTGCAGAGCAGGATGATATTCAATCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATCTATTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGCGAACTGAGGTACAAGAAAGAGATATATGAACTTGTGAAAAAGCGGTCAGAGGAGGCTGACAATGCGAATGAGTATAGAATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATCTAAATGCTGAGGATAAGATGAATCCATTTGCTGAACAAGAGGCTTGGGAAGAACACCAAATTGGAAAGGCAACACTGAAGTTTGGTTCAAAAAATAAAAAACAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGATTTTATCAAGGCATCAGTAATGGAGGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCACATGAAAAATCCAAAGCGAAGTCAGCTTTCGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCTATGTTCCCTTATCGGGATGAATTGCTCGAAGCTGTTCATAATCACCAGGTACTTGTAATTGTTGGAGAAACTGGTTCCGGAAAGACAACACAGATCCCCCAATATCTTCATGAAGCTGGCTACACAAAGCGTGGAATGATTGCATGTACTCAGCCACGACGTGTTGCGGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAGACTATTCTGAAATACATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCGGATTTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACTGATATTCTGTTTGGATTAGTGAAGGATATTGCTCGTTTCCGGCCTGATCTCAAGCTGCTGATATCAAGTGCTACACTTGATGCAGAGAAATTCAGTGATTACTTCGATTCTGCGCCAATATTCAGAATTCCAGGGAGACGATATCCTGTTGAAATAAGCTATACCAAAGCTCCAGAAGCTGACTACTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCCTTACTGGTCAAGAAGAAATTGAAACGGCAGAAGAAATCTTGAAGCATCGAACTAGAGGCTTGGGGACTAAAATTTCTGAGTTAATAATATGCCCTATATATGCCAACCTTCCAACTGAACTACAAGCTAAAATATTTGAACCCACTCCCGAAGGGGCACGAAAGGTTGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTTATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCTGGAAGAACGGGTCCTGGAAAGTGCTTCCGACTGTATACTGCATACAATTATCACAATGATTTGGATGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTATTGAACTTTGATTTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCGTTAAATAAGCTTGGTGAATTAACTAAGGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCAATGTTGTCAAAAATGATAGTGGCTTCAGAAAATTACAAGTGTTCAGATGATATCATTTCTATTGCTGCTATGCTTTCGGTTGGAAACTCAATATTTTACCGTCCAAAAGATAAACAAGTACATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTGGGAGACCATATGGCGCTGCTAAAGGTCTACAATTCATGGAAGGAGACCAATTATTCAACGCAATGGTGTTATGAGAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATATTCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAGATTGAACTAACTTCAAATGCTAATGATTTAGATGCCATCAAGAAATCCATTACATCTGGGTTTTTCCCACACTCTGCACGGCTGCAAAAGAATGGATCATATCGAACTGTTAAACATTCACAGACTGTTCACATACATCCTAGTTCGGGGCTGGCTCAGGTTCTTCCCAGATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACGGAGTTGAAGCCAGAGTGGTTGGTGGAGATAGCCCCCCACTATTACCAGCTTAAGGATGTTGAAGACTCATATTCGAAGAAAATGCCTCGTGGAGCAGGACTTCCATCGTAG 3141 0.4072 MGSDDNLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGISSMDTHAFAEEIYSRVPRRSSGINQYQKQEREAAMLARKQKTYSILKADDDSDDDYVDKSSVTTASSRSSDKHKKRFRKKTEVQDDQDDEVILRKEKERQVKRRTSPDEDSDSESEEERLKDQREKEELEQHMRERDAAGTRKLTEQKLTRKEEEEAIRRSKAAEQDDIQSLRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRSEEADNANEYRMPEAYDQEGGVNQEKRFSVAMQRYRDLNAEDKMNPFAEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKFDYEEMEDSHEKSKAKSAFEALQEERKKLPMFPYRDELLEAVHNHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEISYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNANDLDAIKKSITSGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSYSKKMPRGAGLPS* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1705 1046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 603 778 IPR001650 -
Gso6g1705 1046 Gene3D - 583 758 IPR027417 -
Gso6g1705 1046 PANTHER ATP-DEPENDENT RNA HELICASE 103 1040 - -
Gso6g1705 1046 MobiDBLite consensus disorder prediction 130 162 - -
Gso6g1705 1046 Gene3D - 782 941 - -
Gso6g1705 1046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 580 IPR014001 -
Gso6g1705 1046 SMART ultradead3 405 589 IPR014001 -
Gso6g1705 1046 Gene3D - 362 582 IPR027417 -
Gso6g1705 1046 PANTHER OS05G0389800 PROTEIN 103 1040 - -
Gso6g1705 1046 MobiDBLite consensus disorder prediction 101 229 - -
Gso6g1705 1046 Pfam Helicase associated domain (HA2) 799 873 IPR007502 GO:0004386
Gso6g1705 1046 SMART helicmild6 629 737 IPR001650 -
Gso6g1705 1046 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 522 531 IPR002464 -
Gso6g1705 1046 Coils Coil 916 936 - -
Gso6g1705 1046 Coils Coil 227 254 - -
Gso6g1705 1046 MobiDBLite consensus disorder prediction 169 229 - -
Gso6g1705 1046 MobiDBLite consensus disorder prediction 285 304 - -
Gso6g1705 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 931 IPR027417 -
Gso6g1705 1046 SMART ha2_5 798 890 IPR007502 GO:0004386
Gso6g1705 1046 Pfam Helicase conserved C-terminal domain 610 737 IPR001650 -
Gso6g1705 1046 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 947 1024 IPR011709 -
Gso6g1705 1046 CDD SF2_C_RHA 584 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1705 Gso-Chr6 18501207 18535503 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1705 K12813 - gmx:100809559 1979.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1705 6 18501207 18535503 Gso6g1705 6 18501207 18535503 ECH