Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1656 ATGCTAAAGCGTGGCTTGCACCCTGATGTTGTCACTTTTGCTACTTTGATAGATGTTCTACGCAAAATGGGGGATTTGAAGGCTGCGCGAAACTGTTTTGGTTATATGGCAGAGTTTGATGTTGTTCCTAATGCCCATGCTTATAATTCTTTGATTGATGGGTATTGTAAGGCAGGGAACTTGCCCGAAGCAATGCAATTGCGGGTGGAAATGGAAAGGTGTGGAATCTTCCCTGATGTTGTCACATACAATATACTCATCAAGGGTCTGTGTGGCTCGGGTAGATTGGAAGAAGCTACGAGTTTGATAGAGAAAATGGATGAAGTTGCGGTTCTTGCCAATTCTGCGACGTACAATGTGGTGATTGATGGATTCTATAAAACAGGTGACATGGAGAAGGCTATTGAGGCATGCTCCCAAACGACTGAAAGGAAAATTGAACCTAATGTTATCACGTTTTCGACATTGATTGATGGGTTTTGCCAGAAAGGTAACGTAAAAGCTGCAATGGGCTTGTACACAGAAATGGTAATCAAGGGTATTGTGCCTGATGTGGTAACTTACACGGCTTTGATTGATGGACACTGCAAGGTTGGGAAAACCAAAGAGGCTTTCAGGTTGCACAAGGAGATGCTGGATGCAGGACTAACGCCCAATGTGTTCACAGTTAGTTGTGTAATTGATGGCCTTTTGAAAGATGGAAAGACGAATGATGCAATCAAACTGTTCTTGGAGAAAACTGGAGCTGGTTGCCCTGGTGGTAAAATCGATAGCAGGTTTTGTTCTCTAAACAGTGTGATGTATGCCATTTTAATTCAAGGATTATGTAAAGATGGATGGATCTTTAAGGCCACTAAGTTTTTTGCGGAAATGAGATAG 879 0.4232 MLKRGLHPDVVTFATLIDVLRKMGDLKAARNCFGYMAEFDVVPNAHAYNSLIDGYCKAGNLPEAMQLRVEMERCGIFPDVVTYNILIKGLCGSGRLEEATSLIEKMDEVAVLANSATYNVVIDGFYKTGDMEKAIEACSQTTERKIEPNVITFSTLIDGFCQKGNVKAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGKTKEAFRLHKEMLDAGLTPNVFTVSCVIDGLLKDGKTNDAIKLFLEKTGAGCPGGKIDSRFCSLNSVMYAILIQGLCKDGWIFKATKFFAEMR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1656 292 PANTHER OSJNBA0060P14.6 PROTEIN 1 292 - -
Gso6g1656 292 Pfam PPR repeat family 148 197 IPR002885 -
Gso6g1656 292 Pfam PPR repeat family 43 91 IPR002885 -
Gso6g1656 292 Gene3D Tetratricopeptide repeat domain 140 213 IPR011990 GO:0005515
Gso6g1656 292 Gene3D Tetratricopeptide repeat domain 214 292 IPR011990 GO:0005515
Gso6g1656 292 Gene3D Tetratricopeptide repeat domain 71 139 IPR011990 GO:0005515
Gso6g1656 292 Gene3D Tetratricopeptide repeat domain 1 70 IPR011990 GO:0005515
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 47 80 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 266 292 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 81 108 IPR002885 -
Gso6g1656 292 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Gso6g1656 292 Pfam PPR repeat 117 136 IPR002885 -
Gso6g1656 292 SUPERFAMILY HCP-like 20 216 - -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gso6g1656 292 Pfam PPR repeat 215 243 IPR002885 -
Gso6g1656 292 Pfam PPR repeat 261 292 IPR002885 -
Gso6g1656 292 Pfam PPR repeat 4 36 IPR002885 -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 292 IPR002885 -
Gso6g1656 292 PANTHER ATPASE EXPRESSION PROTEIN 3 1 292 - -
Gso6g1656 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1656 1 292 Miscellaneous Gene Families AT4G11690 34.932 3.66e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1656 - - gmx:100776422 591.267