Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1623 ATGGCGACGAGTATAGGGATAATGGATAGCGCTTACTTTGTCGGCAGAAACGAGATTCTCAGTTGGATCAACAATCGCCTTCAACTTAGCCTCTCTCGCATTGAGGAGGCTGCATCCGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCAAAGACTGAGTATGATATGATCCAGAACTACAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGAAAAGCATATTGAAGTTGGCAGGCTTGTTAAAGGTCGACCTTTGGACAACCTGGAATTCCTACAATGGCTGAAACGCTACTGTGATTCTGTAAATGGTGGCATTATGAATGAGAACTACAATCCTGTAGAGCGTAGGATTAAGGGTGGAAAGGACCGGAATGTTAAGAGTCTAAAGAGCTCAAAATCACTGCAAACAAATACTATGAATCATTCTGGTTCAGGCGACTCACTCAGGTCCAAGCAATTGAGGTCAAGTGGAGGAGCTGACGGGGTTAATTCTTCAGCAGAGATACAAGCTTTGTCCAAGCAGGTTTCTGATCTTAAACTCTCAGTGGATCACTTGGAAAAAGAAAGAGACTTTTACTTTGCAAAACTAAGGGATATAGAAATTCTCTGCCAGGCTTCAGAACTAGAGAACGATCCTATGTCTCTAGCAATCAAGAAGATTCTGTATGCTGCTGATGCAAAAGGATCAGCATTAGATGAAGCTCAGGAGTACCTTAATGATGTCATCAATGGCGGTGAAGATGAAGCTGAAGCAGAAGCAGAAGCTGAAGTAGAAACCGAAGCCTGA 834 0.4293 MATSIGIMDSAYFVGRNEILSWINNRLQLSLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVGRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRIKGGKDRNVKSLKSSKSLQTNTMNHSGSGDSLRSKQLRSSGGADGVNSSAEIQALSKQVSDLKLSVDHLEKERDFYFAKLRDIEILCQASELENDPMSLAIKKILYAADAKGSALDEAQEYLNDVINGGEDEAEAEAEAEVETEA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1623 277 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Gso6g1623 277 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 176 246 IPR004953 GO:0008017
Gso6g1623 277 MobiDBLite consensus disorder prediction 145 177 - -
Gso6g1623 277 SUPERFAMILY EB1 dimerisation domain-like 183 242 IPR036133 GO:0008017
Gso6g1623 277 Coils Coil 184 204 - -
Gso6g1623 277 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 267 - -
Gso6g1623 277 Pfam EB1-like C-terminal motif 201 239 IPR004953 GO:0008017
Gso6g1623 277 Gene3D - 6 134 IPR036872 -
Gso6g1623 277 Gene3D - 176 256 - -
Gso6g1623 277 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Gso6g1623 277 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 267 IPR027328 GO:0008017
Gso6g1623 277 MobiDBLite consensus disorder prediction 135 177 - -
Gso6g1623 277 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1623 Gso-Chr6 17061653 17071169 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1623 K10436 - gmx:100790624 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1432 4 42199481 42205006 Gso6g1623 6 17061653 17071169 GST