Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1548 ATGGAGAATCATCCTTCAGGCCGTGTGATCAGCAATGGTAAAATTGGTTTCTCTACTCCAAATTGCACACATGAACGAGATGATGAGGAACCTGAAATTCGTGTACATCCACAAATTCCAGAGTGGTTTTCAGAGAATTCTCCATTATGGCCAGGCCAAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGAATATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCCCTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCACTTTGCTCTATCCCTAGCCCAAAAAAGGTGCTGCTTATTGGTGGTGGAGATGGTGGTATCCTAAGGGAAATTTCTCGTCACTCGTCTGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTCTATAAAGAATTTTTCCCAGACGTGGCTGTTGGATACAAGGACCCTCGAGTCAAGCTTCATATTATAGATGGAACTCTTTTTTTGAATTCTGTCCCAAAAGGGATGTATGATGCAATAATAGTGGATGCCTTCGACCCAATAAGGCCTGATCATGAGCTTTTTGAATCTGAGTTCTTTGAACTGGTTTCAAAGGCTCTTCGTCCAGGAGGAGTATTGTGCATCCAAGCAGAGAGTATTTGGTTTCATTCCTTGGATATCGAAGAACTCTTCACCAAATGCCGCCAAACTTTCAAAGGCTCCTCTGATTATGCATGGACAACTGTCCCTGCATATCCAAGTGGGGTCATTGGTTTCTTGCTATGTTCCACCGAAGGTCCATTTGTCGACTTCAGAAATCCAATTAACCCGATCGATCCCGAAAATTATGGCATATCAAAGCAACCCTTGAAGTTTTACAACTCAGAAGTTCATTCGGCTGCGTTTTGCTTGCCATCTTTTGCCAAAAGGTTCTCTAATTCCAAAGCTAAGAGCACCGCTAAATGGCCGCAATGTTAA 1017 0.4218 MENHPSGRVISNGKIGFSTPNCTHERDDEEPEIRVHPQIPEWFSENSPLWPGQAHFLKVEKICFQGKSEYQNMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSIPSPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKEFFPDVAVGYKDPRVKLHIIDGTLFLNSVPKGMYDAIIVDAFDPIRPDHELFESEFFELVSKALRPGGVLCIQAESIWFHSLDIEELFTKCRQTFKGSSDYAWTTVPAYPSGVIGFLLCSTEGPFVDFRNPINPIDPENYGISKQPLKFYNSEVHSAAFCLPSFAKRFSNSKAKSTAKWPQC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1548 338 CDD AdoMet_MTases 140 229 - -
Gso6g1548 338 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1548 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 41 327 IPR001045 GO:0003824
Gso6g1548 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 40 277 IPR030374 -
Gso6g1548 338 PANTHER SPERMIDINE SYNTHASE 41 327 - -
Gso6g1548 338 TIGRFAM speE: spermidine synthase 42 320 IPR001045 GO:0003824
Gso6g1548 338 Gene3D Vaccinia Virus protein VP39 95 330 IPR029063 -
Gso6g1548 338 Pfam Spermidine synthase tetramerisation domain 42 95 IPR035246 -
Gso6g1548 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 119 132 IPR030373 -
Gso6g1548 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 324 IPR029063 -
Gso6g1548 338 Pfam Spermine/spermidine synthase domain 98 284 - -
Gso6g1548 338 Hamap Polyamine aminopropyltransferase [speE]. 41 326 IPR001045 GO:0003824
Gso6g1548 338 Gene3D Spermidine synthase, tetramerisation domain 24 94 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1548 Gso-Chr6 15950249 15954891 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1548 K00797 - gmx:100785862 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1548 6 15950249 15954891 Gso6g1548 6 15950249 15954891 ECH