Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1509 ATGTTGATTCCGTTTGAATGGCTCCATTGCGAACTCAACAACATTTGTAAGTCCCTCTTGAGGGCGAAGCAATTACACGCATTCCTTTTGAAGACCCATCTATCACAAGACCCCTTTTACGCTACAAAAATTGTTAGGCTCTATGCAGCCAACAACGACATTAACTCTGCCCACCATCTGTTCGACAAAACTCCCAACCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTCGCGCAGTCCCAAAGATTTTTCAATGCAATCTCTCTGTTTAGAACCATGCTTGGGGCTGACATAAGTCCTGATGGTCACACCTATGCTTGTGTTATACGTGCCTGTGCTGACAACTTTGATTTCGGCATGCTAAGACGTGTTCATGGAGGTGCTGTGGCTGCAGGGTTAGGAAGGGACCCTGTTTGTTGCAGTGCACTTGTGGCTGCTTATTCAAAACTAGGCCTTGTTCATGAAGCGCGTAGAGTATTCGATGGGATCGCTGAACCGGACTTAGTTTTGTGGAATTCGTTGATTTCTGGATATGGGGGCTTTGGTCTGTGGGATGTGGGGATGCAGATGTTTAGCATGATGAGACTTTTTGGGATGAAGCCTGATGGATATACACTGGCTGGGTTGCTTGTGGGTATTGCGGATTCTGGAATGCTGAGCATTGGCCAAGGATTGCATTGCTTGAGCCAGAAGAGTGGGCTTGATTCTGATTCTCATGTTGGTAGTCTGCTGTTGAGTATGTACTCGAGATGTAAGCACATGGCTTCGGCATATAGAGTCTTTTGTAGTATTTTGAATCCCGATTTGGTCACATGGTCTGCTCTTATAGTTGGGTATTCTCAGTCTGGGGAGTATGAGAAGGTGCTGCTTTTTTTCAGGAAATTAAACATGGAAAGCAAGAAGCCAGATTCTGTTTTGATTGCCAGTGTATTGGCTTCTATTGCTCAGATGGCGAATGTAGGACTCGGATGTGAGGTACATGGTTATGCTCTTCGGCATGGATTGGAATTGGATGTCAGGGTCTCCTCTGCTCTTGTAGACATGTATTCAAAGTGTGGTTTCTTGCACTTGGGAATTTGTGTTTTCAGGGTAATGCCAGAACGGAATATTGTTTCTTTTAATTCAGTAATTTTGGGTTTTGGCTTGCATGGATGTGCTTCGGAGGCTTTCAGGATGTTTGATAAGATGCTGGAGAAAGGATTGGTACCTGATGAAGCCACATTCTCTTCTCTCCTATGTGCCTGTTGTCATGCTGGACTTGTCAAAGATGGCCGGGAGATTTTCCAGAGAATGAAACATGAATTTAACATTAGAGCTAGGCCTGAGCACTATGTTTACATGGTGAAGCTCCTTGGCAGTGCTGGAGAGTTGGAAGAAGCTTACAATCTGACCCAGTCCTTACCAGAACCTGTAGACAAGGCTATCCTAGGAGCCTTATTATCATGCTGTAATATTTGTGGAAATTCTGAGCTGGCAGAAACTGTAGCACATCAGCTTTTTGAAAGTAGTCCTGCCGATAATGTCTATAGGGTTATGCTTTCTAATATATATGCCGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGATAATATGACAGGAGGCCCGAGAAAAATGCCCGGACTAAGCTGGATTGATGGCAGTTAG 1656 0.4469 MLIPFEWLHCELNNICKSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAHHLFDKTPNRSVYLWNSMIRAFAQSQRFFNAISLFRTMLGADISPDGHTYACVIRACADNFDFGMLRRVHGGAVAAGLGRDPVCCSALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSMMRLFGMKPDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSDSHVGSLLLSMYSRCKHMASAYRVFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNMESKKPDSVLIASVLASIAQMANVGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFRVMPERNIVSFNSVILGFGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACCHAGLVKDGREIFQRMKHEFNIRARPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNICGNSELAETVAHQLFESSPADNVYRVMLSNIYAGDGRWDDVKKLRDNMTGGPRKMPGLSWIDGS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1509 551 TIGRFAM PPR: pentatricopeptide repeat domain 272 302 IPR002885 -
Gso6g1509 551 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Gso6g1509 551 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Gso6g1509 551 TIGRFAM PPR: pentatricopeptide repeat domain 409 435 IPR002885 -
Gso6g1509 551 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Gso6g1509 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Gso6g1509 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Gso6g1509 551 Pfam PPR repeat 140 163 IPR002885 -
Gso6g1509 551 Pfam PPR repeat 272 297 IPR002885 -
Gso6g1509 551 Pfam PPR repeat 171 200 IPR002885 -
Gso6g1509 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Gso6g1509 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 548 - -
Gso6g1509 551 Gene3D Tetratricopeptide repeat domain 320 442 IPR011990 GO:0005515
Gso6g1509 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Gso6g1509 551 PANTHER OS01G0545900 PROTEIN 6 548 - -
Gso6g1509 551 Pfam E motif 490 549 IPR046848 -
Gso6g1509 551 Pfam PPR repeat family 370 419 IPR002885 -
Gso6g1509 551 Pfam PPR repeat family 68 115 IPR002885 -
Gso6g1509 551 Gene3D Tetratricopeptide repeat domain 124 226 IPR011990 GO:0005515
Gso6g1509 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Gso6g1509 551 Gene3D Tetratricopeptide repeat domain 11 123 IPR011990 GO:0005515
Gso6g1509 551 Gene3D Tetratricopeptide repeat domain 227 319 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1509 Gso-Chr6 15272776 15282216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1509 28 549 Glycoside Hydrolase AT3G49170 29.434 5.20e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1509 - - gmx:100820049 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1509 6 15272776 15282216 Gso6g1509 6 15272776 15282216 ECH