Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1461 ATGCTGAAATCAACCTTCACTCCAATTTTCTGGGTACTCACACCCAAACCCAAACCTCCAAAACTCCCTTCCCATGCAATCACAAACACCTTCTTCACAAGAAGCATGCCACATGTTCGACATAATGCCCCTGTCAACCCCATCACCCCACCACCCGCATCTTCAGCCTACATCCACCTCCCATTCTGCCGCAAACGCTGCCACTACTGCGACTTCCCCATCGTCGCCCTCGGCTCCACCTCCGCCCAAATCGAGGACGACCCACGAGTCTCAAACTACATCCACTGGCTCTGCAGAGAAATCAATGCCACCAATGTGGACCAACCTGATGATGCCAACACCATCACACCCCTTCAAACTGTCTACTTTGGAGGTGGGACGCCCTCGCTGGTGCCTCCTAGGATGGTTTCCTCAGTGTTGGACACACTGAGGACGAAGTTTGGGCTGCGCGAGGACGTGGAAATATCGATGGAGATGGACCCGGGCACGTTTGATGCTGAGAAGATGCGAGGGATGGTGGTGCTGGGAGTGAATAGAGTGTCCTTGGGAGTTCAGGCGTTTCGGGAGGAGCTGTTGAGAGCTTGTGGGAGGGCACATGGGCTGAAAGAGGTTCATGAGGCTATTGATGTTGTCAAGTTATGTGAAGTTGAGAATTGGAGTATTGATCTTATAGCTTCATTGCCTCATCAGACTAGTGACATGTGGGAGGAAAGTCTAAGGCTTGCCATTGAAGCACAACCAACTCATGTTTCGGTTTATGACTTGCAAATTGAGCAAGGCACGAAATTTGGGCGATTGTACTCACTAGGGGAATTCCCAATGCCTTCTGAAACACAATCAGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTTCTGATGCGAATTACAATCATTACGAAATCAGCAGCTACTGCAAGAGTGGATATGAGTGCAAACACAACTTTATCTATTGGAAGAACAAGCCTTTCTATGGCTTTGGCCTTGGCTCTGCTAGCTTTGTTGGTGGGTTGAGGTTTTCAAGACCAAGGAAAGTGAACGATTATATTAATTTTGTGCAGAATCTGGAAAATGGATTCGTAAATAGCTCTGTTGAAGGCCACATTCATGGCAAGGACACAGTCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCATAGACCTAATGAGTCTCCAAGAATCGTTTGGCAGCTCTATTGTTTTGTCTTTGCTTGAGGCTTATAAACCTTATGTTGAGAGTGGACATGTGGTTTGCTTGGACGAGCATAGGAGAACCGTTAGAATAGATGACCTTAATTCTTTTTTGAACAAAACTAATGCAGAAGGAAGGGTGGCTTATATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTGATAGCCATAGCTTTTGGGGTTATCGACTCTTGGAAGGATATGCCTCCATACCAAGAAGCCGAAGCTACTTGA 1461 0.4689 MLKSTFTPIFWVLTPKPKPPKLPSHAITNTFFTRSMPHVRHNAPVNPITPPPASSAYIHLPFCRKRCHYCDFPIVALGSTSAQIEDDPRVSNYIHWLCREINATNVDQPDDANTITPLQTVYFGGGTPSLVPPRMVSSVLDTLRTKFGLREDVEISMEMDPGTFDAEKMRGMVVLGVNRVSLGVQAFREELLRACGRAHGLKEVHEAIDVVKLCEVENWSIDLIASLPHQTSDMWEESLRLAIEAQPTHVSVYDLQIEQGTKFGRLYSLGEFPMPSETQSAEFYKMASRMLSDANYNHYEISSYCKSGYECKHNFIYWKNKPFYGFGLGSASFVGGLRFSRPRKVNDYINFVQNLENGFVNSSVEGHIHGKDTVMDVVMLSLRTAQGIDLMSLQESFGSSIVLSLLEAYKPYVESGHVVCLDEHRRTVRIDDLNSFLNKTNAEGRVAYIRLSDPEGFLLSNELIAIAFGVIDSWKDMPPYQEAEAT* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1461 486 Gene3D tm_1862 like domain 61 290 IPR023404 -
Gso6g1461 486 SMART MiaB 53 286 IPR006638 GO:0003824|GO:0051536
Gso6g1461 486 SFLD Radical SAM 54 421 IPR007197 GO:0003824|GO:0051536
Gso6g1461 486 Pfam Radical SAM superfamily 58 241 IPR007197 GO:0003824|GO:0051536
Gso6g1461 486 SFLD HemN-like, clustered with heat shock genes 54 421 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Gso6g1461 486 PANTHER COPROPORPHYRINIGEN III OXIDASE 1 470 IPR034505 -
Gso6g1461 486 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 470 - -
Gso6g1461 486 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 55 414 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Gso6g1461 486 ProSiteProfiles Radical SAM core domain profile. 48 294 IPR007197 GO:0003824|GO:0051536
Gso6g1461 486 SUPERFAMILY Radical SAM enzymes 31 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1461 Gso-Chr6 14596636 14598928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1461 - K07739 gmx:100779022 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1461 6 14596636 14598928 Gso6g1461 6 14596636 14598928 ECH
Gso4g1626 4 46035650 46037897 Gso6g1461 6 14596636 14598928 GST