Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1454 ATGGCACCAACCTTACCTATAGAGTTTGCTGGACAGAAGGAATCCAGAAAGTACTCTCATTCACAGAATATGGGGAAATCTAGAAAATACTCCAAAGGTTATGCTACTGGCTTTGTTCCTGATTTTCGGCATGCTGTTGAGACTATTGGTGAATCAGAAGGGCTGGGTAGCTTGGGAAGGGTTGATATGGAACTGACGGCTTTGGCAGATTCTTGTGCACCAAAAAGGAAACGCCCTGGCTTGAATACCTGTGGTGGTGATTATGCTGGTAGTTTCAATGTACCATTTCGACATTTCTCATTATCCGCGATGTCAGGTTTTGAGCGAAAGGATTTGAAAGTGAGGTTAACTTGGGAACTTGAACAAGTAAGGGAATTTCAGAAGAAAATTGATGGTATGAACTCAAGTGTTGTTGGAGGATTGTCTCTCTTCAGTGACATAAGGGGCTGCAGTGCAGGGCAGAAGAGGCCTAAGCTGGAGAGCCAGCATAGTACAATGGAAGTATCAGTGCCACCTGGTAAGAAAAGGCCCGTACCAGGACATAATGGTCCCAAGTCAAAGAAAAGTATGTCTGAGCGTCTTGAACATGCAAAACCTGCTGCGCCAGTGACTTCATATGCTATGTTGATGAAATCGTGTGAGAATGTACTAAACCGATTGATGTCTCATCAATTTGCTTGGGTTTTTAACGATCCAGTTGATGTTGTTAAATTGAACATTCCAGATTATTTCACTGTCATCAAGCATCCAATGGATTTGGGTACTGTGAAGAAGAGAATAACCTCTGGCGAATATTCAAATCCCATGGATTTTGCTGCTGATGTGCGGCTGACTTTCGATAATGCAATGTTTTATAATCCAGCAGGCAATGATGTACACATCATGGCCGAGACCCTTAGTAAATTTTTTGAAACAAGGTGGAAGGCCATAGAGAAGAAAATTCCTGTTATTGATTGTGTTGCGTCCGAGCCTTCAAGACCTACTCGTGTTGAAACAGAAATTTCTGACCGAGTTCCTCCCACAAAAAAGAAGAAAATAACACCAAATGACTCTAGTGTCAAGCCAGAGCCTGTTAAAAGAATCGTTACCGTAGAAGAGAAGCAAAAATTGAGTCTAGAGTTGGAGACAATGATTGGAGAGCTGCCTGATAGCATTGTTGATTTCTTGAGAGAGCAAAGTTATAATGAAGGGCAAACCAATGATGATGAAATTGAGATCGATATTGATACTCTTAGTGATGATACCTTATTCAAACTGCGGAAGCTTCTTGATGATTACATGCTGGAGAAGCAAAAATCCCAGGCAAAAGCTGGACAATGTGAAATGGAGCTTCTGAATGAATCAGGGTTCAGCAATTCATCAATGCAACCTTGCAAAGATGCAGGCAATGAACAGGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTATTTCCAATTATCCTTCATTAGAGATTGAAAATGATGTTACCAAGAGAAACAGTAAATGCAGTAGCTCAAGCAGCTCTAGTAGTGAATCTGGCTCTTCATCCAGTGATTCAGACTCAGTTAGTTCATCTGGTAGTGAGTTGGATATGGCTAAAACATCAGAACCTCTTAGTGCCACCAAGGAAAACATAGGATTTGGCTTGACTTCAGATCAAAACAAAGGGGATCCTGGTAATTCAGAAACTGGAAAGGATTCAACAAATGTGGGAGGCCAAGTTGAGGAGAGTTCCCAGAGTAGGCCTGTTGCTACTGAGCCAGAAAGCCATCAAGAGGGGGAGAGTGCTGCATCTAAGAGGCAAGTCTCTCCCGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGTTTTGCTGACACCATACTTAAAGCTCAAGAGAAAGCACTTGAAAAGGATGAAAAGCGAGATCCTGAAAAACTTAGGATTGAGCGAGAAGATCTTGAAAGGCGGCAGAAAGAAGAGAAAGCTCGGTTGCAGGCGGAGGCAAAGGCTGCAGAAGAGGCTCAGAGGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCCAAAAGGAAAAGGGAACTGGAAAGAGAAGCAGCCCGCCAGGCTTTGCAAAAGATGGAGAAAACTGTTGATATCAATGAGAACAGTCAATTTTTGGAAGATCTAGAAATGCTTAGTGCTGTACATGATGAACACCTGCCAAGTTTCAAAGAAGAGACAAGCACAGATCAACCTCAAGATGGATTGGGTGGGATCAAGCTACAGGGAAATCCCTTGGAACAGCTAGGGTTGTACATGAAGGATGAGGATGAGGAGGAGGATGAGGAGGAAGAGGATGAACTGCCTCCGAGTGGTGCTGTAGGACCATCAAATGATGTTGAAGAAGGAGAGATTGATTGA 2367 0.4322 MAPTLPIEFAGQKESRKYSHSQNMGKSRKYSKGYATGFVPDFRHAVETIGESEGLGSLGRVDMELTALADSCAPKRKRPGLNTCGGDYAGSFNVPFRHFSLSAMSGFERKDLKVRLTWELEQVREFQKKIDGMNSSVVGGLSLFSDIRGCSAGQKRPKLESQHSTMEVSVPPGKKRPVPGHNGPKSKKSMSERLEHAKPAAPVTSYAMLMKSCENVLNRLMSHQFAWVFNDPVDVVKLNIPDYFTVIKHPMDLGTVKKRITSGEYSNPMDFAADVRLTFDNAMFYNPAGNDVHIMAETLSKFFETRWKAIEKKIPVIDCVASEPSRPTRVETEISDRVPPTKKKKITPNDSSVKPEPVKRIVTVEEKQKLSLELETMIGELPDSIVDFLREQSYNEGQTNDDEIEIDIDTLSDDTLFKLRKLLDDYMLEKQKSQAKAGQCEMELLNESGFSNSSMQPCKDAGNEQVEEDVDIVGGNDPPISNYPSLEIENDVTKRNSKCSSSSSSSSESGSSSSDSDSVSSSGSELDMAKTSEPLSATKENIGFGLTSDQNKGDPGNSETGKDSTNVGGQVEESSQSRPVATEPESHQEGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREDLERRQKEEKARLQAEAKAAEEAQRKAEAEAAAEAKRKRELEREAARQALQKMEKTVDINENSQFLEDLEMLSAVHDEHLPSFKEETSTDQPQDGLGGIKLQGNPLEQLGLYMKDEDEEEDEEEEDELPPSGAVGPSNDVEEGEID* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1454 788 Pfam Bromodomain extra-terminal - transcription regulation 362 424 IPR027353 -
Gso6g1454 788 MobiDBLite consensus disorder prediction 492 583 - -
Gso6g1454 788 SUPERFAMILY Bromodomain 189 315 IPR036427 GO:0005515
Gso6g1454 788 MobiDBLite consensus disorder prediction 329 350 - -
Gso6g1454 788 PANTHER TRANSCRIPTION FACTOR GTE8 25 767 - -
Gso6g1454 788 MobiDBLite consensus disorder prediction 154 196 - -
Gso6g1454 788 MobiDBLite consensus disorder prediction 755 771 - -
Gso6g1454 788 Gene3D - 356 434 IPR038336 -
Gso6g1454 788 ProSiteProfiles Bromodomain profile. 221 293 IPR001487 GO:0005515
Gso6g1454 788 Pfam Bromodomain 213 297 IPR001487 GO:0005515
Gso6g1454 788 ProSiteProfiles NET domain profile. 352 434 IPR027353 -
Gso6g1454 788 MobiDBLite consensus disorder prediction 624 689 - -
Gso6g1454 788 Gene3D - 187 318 IPR036427 GO:0005515
Gso6g1454 788 MobiDBLite consensus disorder prediction 492 601 - -
Gso6g1454 788 PRINTS Bromodomain signature 224 237 IPR001487 GO:0005515
Gso6g1454 788 PRINTS Bromodomain signature 240 256 IPR001487 GO:0005515
Gso6g1454 788 PRINTS Bromodomain signature 256 274 IPR001487 GO:0005515
Gso6g1454 788 PRINTS Bromodomain signature 274 293 IPR001487 GO:0005515
Gso6g1454 788 SMART bromo_6 202 312 IPR001487 GO:0005515
Gso6g1454 788 Coils Coil 641 705 - -
Gso6g1454 788 MobiDBLite consensus disorder prediction 719 788 - -
Gso6g1454 788 PANTHER TRANSCRIPTION FACTOR GTE10 25 767 - -
Gso6g1454 788 MobiDBLite consensus disorder prediction 328 354 - -
Gso6g1454 788 CDD Bromo_plant1 209 307 IPR037377 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1454 Gso-Chr6 14495490 14500645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1454 - - gmx:100782458 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1454 6 14495490 14500645 Gso6g1454 6 14495490 14500645 ECH
Gso4g1635 4 46129917 46134926 Gso6g1454 6 14495490 14500645 GST