Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1446 ATGAAGCTCGATACCACCGGTCTCGAATCGTTTCCCACACTGCTTGCGCCTCAAAACGACGTCGTTGGAGAACTCTCCGCCGCTCCATCCTTCGACCTTCCGAATTCCAACGATTTCGATGGGTTTGTGAAAGAAGCTATTCAGATGGTGAAGCCCGCGAAGGGTACTACGACTCTTGCTTTTATATTTAAGGAGGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGATGAGACGGGTCCTGGTCTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTACCGATATGACCTGTCAGTTGAGGAAGCTGCTGAACTTGCTCGACGAGCAATTTATCACGCAACATTTCGTGATGGGGCCAGTGGTGGAGTTGCTAGCGTTTACTATGTGGGTCCAAATGGATGGAAGAAATTGTCCGGTGATGATGTTGGGGAACTTCATTACCATTACTACCCAGTTACCCCAAGCACCGTGGAACAAGAAATGGTTGAGGCAACTGGAGCTTGA 819 0.4628 MKLDTTGLESFPTLLAPQNDVVGELSAAPSFDLPNSNDFDGFVKEAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1446 272 PANTHER PROTEASOME SUBUNIT BETA 29 271 - -
Gso6g1446 272 CDD proteasome_beta_type_5 56 243 - -
Gso6g1446 272 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 56 265 IPR029055 -
Gso6g1446 272 PRINTS Proteasome component signature 63 78 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gso6g1446 272 PRINTS Proteasome component signature 184 195 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gso6g1446 272 PRINTS Proteasome component signature 195 206 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gso6g1446 272 PRINTS Proteasome component signature 220 231 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gso6g1446 272 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 29 271 - -
Gso6g1446 272 ProSitePatterns Proteasome beta-type subunits signature. 59 106 IPR016050 GO:0005839|GO:0051603
Gso6g1446 272 Pfam Proteasome subunit 54 234 IPR001353 GO:0005839|GO:0051603
Gso6g1446 272 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 31 254 IPR029055 -
Gso6g1446 272 ProSiteProfiles Proteasome beta-type subunit profile. 55 234 IPR023333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1446 Gso-Chr6 14401631 14405210 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1446 K02737 - gmx:100779240 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1644 4 46245124 46248605 Gso6g1446 6 14401631 14405210 GST