Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1393 ATGGCTCCTCCCAGAGGTGGTGGTGGGTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGGGGTGGCGGTGGAGGAAGAGGAGGAGACAGGGGTACGCCGTTCAAAGCTAGAGGCGGTGGCCGTGGTGGCCGCGGAGGAGGCAGGGGTGGTGGCCGTGGCGGCGGCAGAGGTGGAATGAAGGGAGGTAGCAAGGTTGTGGTTCAGCCCCATAGGCATGATGGCATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAACGAGAAAAGGATTACCGTTCAGAACGAAGACAGTTCCAAAGATGAGTACAGAGTTTGGAATCCTTTCCGTTCGAAGTTGGCCGCTGCCATCCTTGGTGGTGTTGACAACATATGGATTAAACCTGGTGCCAGAGTCCTTTACCTAGGAGCTGCTTCCGGCACCACTGTTTCTCACGTATCAGATGTTGTTGGCCCAACTGGAGTTGTCTATGCAGTAGAGTTTTCCCATAGAAGTGGTCGTGACTTGGTCAATATGGCAAAGAAGCGAACTAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTAGTTGGAATGGTTGATGTCATATTTTCTGACGTTGCTCAGCCTGATCAGGCTAGGATTTTGGGGCTGAATGCTTCATATTATCTAAAAACAGGGGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCTGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTAAAGGCTGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCCTGTGTGGTTGGTGGATACAGAATGCCCAAGAAGAAAAAAGATGCTGCTGAGTAG 918 0.4891 MAPPRGGGGFRGGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDSSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKTGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAAE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1393 305 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 6 303 - -
Gso6g1393 305 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 82 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 Gene3D Vaccinia Virus protein VP39 119 296 IPR029063 -
Gso6g1393 305 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 292 IPR029063 -
Gso6g1393 305 MobiDBLite consensus disorder prediction 1 65 - -
Gso6g1393 305 PIRSF Nop17p 18 298 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 Gene3D Phosphorylase Kinase; domain 1 63 118 - -
Gso6g1393 305 Pfam Fibrillarin 68 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 ProSitePatterns Fibrillarin signature. 166 180 IPR020813 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 6 303 - -
Gso6g1393 305 SMART Fibrillarin_2 68 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 86 105 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 114 133 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 141 162 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 166 183 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 191 220 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 221 250 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gso6g1393 305 PRINTS Fibrillarin signature 273 294 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1393 Gso-Chr6 13717315 13720599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1393 K14563 - gmx:100788688 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1693 4 46944834 46947929 Gso6g1393 6 13717315 13720599 GST