Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1326 ATGGAGAAGTGGGTGGCTTTGGTGTTGCTGTTGGTTTTGTGGAAAATAAGGGAAGGTTTTGGCGTTGAAGCTGAGGAGGTGACATATGATGGAAGATCTCTCATCATTGATGGCCAGAGAAAAATTCTCTTCTCTGGTTCAATTCATTATCCTCGAAGCACTCCTCAGATGTGGCCAGATTTGATAGCGAAAGCAAAACAAGGAGGACTAGATGTGATTCAGACCTATGTGTTTTGGAATTTACACGAGCCCCAACCCGGAATGTATGATTTCAGCGGTAGATATGACTTGGTGGGATTCATAAAGGAAATCCAAGCTCAAGGGCTGTATGTTTGCCTCAGGATTGGACCTTTCATCGAGAGTGAATGGACATACGGGGGATTCCCTTTCTGGTTACATGATGTACCTGGCATTGTCTACCGGACGGATAATGAACCATTCAAGTTCTACATGCAAAATTTTACAACAAAAATTGTGAACATGATGAAAGAAGAGGGACTATATGCTTCGCAAGGAGGCCCAATTATATTGTCACAGATTGAAAATGAATACCAAAACATCCAAAAGGCATTTGGCACAGCAGGATCACAGTATGTTCAATGGGCTGCAAAAATGGCAGTGGGCCTTGACACTGGCGTACCATGGATTATGTGCAAGCAAACTGACGCTCCTGATCCTGTGATCAACACATGCAATGGCATGAGATGCGGAGAAACTTTTACCGGACCGAATTCCCCCAATAAACCTGCATTGTGGACTGAGAACTGGACATCTTTCTATCAAGTGTATGGTGGACTGCCATACATAAGGTCTGCTGAAGATATTGCATTTCATGTCACCCTTTTTATTGCAAGAAATGGAAGCTATGTCAATTATTACATGTACCATGGAGGAACCAACTTTGGGAGAACGGGCTCAGCTTATGTTATAACAGGCTATTATGATCAAGCCCCACTTGATGAATATGGTTTGCTTAGGCAACCAAAGTGGGGACATCTCAAGCAGTTACATGAAGTAATTAAATCTTGCTCTACCACATTATTACAAGGAGTACAGAGGAACTTCACTTTAGGTCAACTTCTCGAAGTTTATGTCTTTGAAGAAGAAAAAGGAGAATGTGTTGCATTCCTTATAAACAATGATAGAGATAATAAGGCTACTGTGCAATTCCGCAACAGCTCATATGAATTGCTCCCCAAGTCCATAAGCATCTTACCAGATTGTCAAAATGTGACTTTCAGCACTGCAAATGTAAATACAACAAGCAACAGAAGGATCATAAGTCCAAAACAAAACTTTAGCTCAGTGGATGATTGGCAACAATTCCAAGATGTCATTTCAAACTTTGATAATACCTCATTAAAATCGGATTCATTACTTGAGCAAATGAATACAACCAAAGATAAATCAGATTACCTTTGGTATACTCTTAGGTTTGAATATAATTTATCTTGCAGCAAACCAACACTTAGTGTTCAGTCTGCTGCTCATGTTGCCCATGCTTTTGTGAACAACACATACATAGGAGGGGAACATGGAAATCATGATGTGAAATCATTCACCTTAGAGCTCCCGGTTACAGTAAATCAAGGGACAAACAACCTTTCTATACTCAGCGTTATGGTTGGACTTCCGGATTCAGGGGCATTTCTCGAAAGAAGGTTCGCTGGTTTAATCAGTGTGGAACTTCAGTGCAGCGAACAAGAGTCTCTTAATTTGACCAATTCTACGTGGGGTTATCAGGTTGGATTAATGGGGGAGCAATTACAAGTATATAAAGAGCAAAATAACAGTGATACTGGATGGAGTCAACTGGGGAATGTTATGGAACAAACGCTTTTTTGGTACAAGACTACATTTGACACACCAGAGGGAGATGACCCTGTTGTTTTGGACCTTAGCTCAATGGGAAAAGGTGAGGCTTGGGTAAATGGAGAAAGCATTGGTCGCTATTGGATCTTGTTTCATGATTCCAAAGGCAACCCTTCACAATCACTGTATCACGTGCCTCGGTCTTTCCTTAAAGACTCTGGAAACGTTTTGGTTTTGCTAGAGGAAGGTGGTGGGAACCCTCTTGGTATCTCCTTGGACACTGTTTCAGTCACAGATTTACAGCAAAACTTTTCTAAATTATCATTACCCTCTTCTGCTTAG 2154 0.4118 MEKWVALVLLLVLWKIREGFGVEAEEVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPDLIAKAKQGGLDVIQTYVFWNLHEPQPGMYDFSGRYDLVGFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNEPFKFYMQNFTTKIVNMMKEEGLYASQGGPIILSQIENEYQNIQKAFGTAGSQYVQWAAKMAVGLDTGVPWIMCKQTDAPDPVINTCNGMRCGETFTGPNSPNKPALWTENWTSFYQVYGGLPYIRSAEDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTGSAYVITGYYDQAPLDEYGLLRQPKWGHLKQLHEVIKSCSTTLLQGVQRNFTLGQLLEVYVFEEEKGECVAFLINNDRDNKATVQFRNSSYELLPKSISILPDCQNVTFSTANVNTTSNRRIISPKQNFSSVDDWQQFQDVISNFDNTSLKSDSLLEQMNTTKDKSDYLWYTLRFEYNLSCSKPTLSVQSAAHVAHAFVNNTYIGGEHGNHDVKSFTLELPVTVNQGTNNLSILSVMVGLPDSGAFLERRFAGLISVELQCSEQESLNLTNSTWGYQVGLMGEQLQVYKEQNNSDTGWSQLGNVMEQTLFWYKTTFDTPEGDDPVVLDLSSMGKGEAWVNGESIGRYWILFHDSKGNPSQSLYHVPRSFLKDSGNVLVLLEEGGGNPLGISLDTVSVTDLQQNFSKLSLPSSA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1326 717 Pfam Beta-galactosidase jelly roll domain 609 683 IPR025300 -
Gso6g1326 717 PANTHER BETA-GALACTOSIDASE 6 24 711 - -
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 611 625 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 PRINTS Glycosyl hydrolase family 35 signature 638 654 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 SUPERFAMILY Galactose-binding domain-like 577 702 IPR008979 -
Gso6g1326 717 Pfam Glycosyl hydrolases family 35 33 338 IPR031330 -
Gso6g1326 717 Gene3D - 438 571 - -
Gso6g1326 717 Gene3D - 572 708 - -
Gso6g1326 717 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Gso6g1326 717 PANTHER BETA-GALACTOSIDASE RELATED 24 711 IPR001944 GO:0004553|GO:0005975
Gso6g1326 717 Gene3D Glycosidases 24 344 - -
Gso6g1326 717 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Gso6g1326 717 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Gso6g1326 717 SUPERFAMILY Galactose-binding domain-like 402 558 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1326 Gso-Chr6 12991868 13000205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1326 6 702 Glycoside Hydrolase AT5G63800 63.481 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1326 - - gmx:100818637 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1756 4 47671974 47682131 Gso6g1326 6 12991868 13000205 GST