Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1294 ATGGAATCCGGCAAAACAACCTTTGGAGCCGTGGTCCTGGGAACCTGTACCCGACCCTCCTGGGCCCTCATCTTCCTCCTCTTCACCCTCGTCACCTTTCTCACCCTCCACCTTCCCGCCAGGCCCGTTTGGTTCCTCTCGGGCCTACAGCCCGGGCCCTATCCAACAACTACCCCAACCTGCGCCGGCTTCTTCCGCGATGTTCCGCCGAGGAAGGTCGTCTTGTCGATCGAGGATTTCGGCGGCGTCGGAGACGGGAAAACATCCAATACCGAATCGTTTCGGAGGGCGATTCGGTACATGCAGCGCTTCCAGAACCGCGGTGGGGCCCAGCTTAATATCCCCACCGGAACTTGGCTCACCGGCAGTTTCAATCTCACAAGCAATTTCACGCTTTTTCTTCACCACGGTGCCGTTATTCTCGCCTCTCAGGACCCAAAAGAATGGCCAATAATTGAGCCATTGCCATCGTATGGAAGAGGCAGAGAGAGGCTAGGAGGAAGACATATTAGCCTTATACATGGAAATGGCATTAGCAATGTTGTCATTACAGGACAAAATGGGACAGTGGATGGTCAAGGAAGGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACGAGAGGGCACCTCCTTGAGCTAATCAGCTCGGATAATGTTCTTATATCGAACCTCACCTTTCGAAATTCCCCTTTTTGGACCATCCATCCTGTTTACTGCAGCAATGTTGTGGTCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCAAGTACCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATTAAGAGTGGTTGGGATCACTATGGAATAACCATGGCCCATCCTAGCACAAATATTATAGTAAGAAGAATATCAGGCACTACCCCAACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAATATCACAATTGAGAATTTGCACGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGACAAAGGCAGAGGAGGCTACATAACAAATGTTAGTATTAGTGATATAAGAATGGAGAGAGTGAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTCAAAGACATTTTAATCAGTAATGTGGTCAGTGTAAATTCAACAAAAGCCCCGGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTGTGCTTCAAAAACATTACCCTACATGGTGTAGCCTTATCTGCGAGATGGCGTTGTGAATATGTCTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCATGTCCTGAGTTGCGGAACAATAGCTATTCATCCTGGTGTTCAGCTTCCTGA 1434 0.4784 MESGKTTFGAVVLGTCTRPSWALIFLLFTLVTFLTLHLPARPVWFLSGLQPGPYPTTTPTCAGFFRDVPPRKVVLSIEDFGGVGDGKTSNTESFRRAIRYMQRFQNRGGAQLNIPTGTWLTGSFNLTSNFTLFLHHGAVILASQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGRMWWELWWNRTLEHTRGHLLELISSDNVLISNLTFRNSPFWTIHPVYCSNVVVKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMAHPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGVALSARWRCEYVSGFATEVFPVPCPELRNNSYSSWCSAS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1294 477 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 475 - -
Gso6g1294 477 SUPERFAMILY Pectin lyase-like 69 466 IPR011050 -
Gso6g1294 477 Pfam Glycosyl hydrolases family 28 171 451 IPR000743 GO:0004650|GO:0005975
Gso6g1294 477 PANTHER PECTIN LYASE-RELATED 13 475 - -
Gso6g1294 477 SMART pbh1 269 301 IPR006626 -
Gso6g1294 477 SMART pbh1 219 241 IPR006626 -
Gso6g1294 477 SMART pbh1 331 352 IPR006626 -
Gso6g1294 477 SMART pbh1 242 268 IPR006626 -
Gso6g1294 477 SMART pbh1 303 325 IPR006626 -
Gso6g1294 477 Gene3D - 65 452 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1294 Gso-Chr6 12617887 12622049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1294 12 465 Glycoside Hydrolase AT4G33440 67.904 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1294 - - gmx:100814190 979.163