Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1293 ATGAAGATAAAGTCTCATTTTTCCTTCTCCCTAATGTTTCTTATAGGCATAGCCATTAGCCACACACATGTTTCTTTAGCAGAATGTGACAATGTGAAGGACTATTGCCCTACAATTCCTCCCCAAAAGCAAACCATATTCCTCAATGGCTTCCCCTGCGAGAACCCAAATAACACAATTGCACATGATTTCAAGAGCATGGAACTAAGCAAGCCAGGTTCAAGAGACAAGTTAGGTTCATTAGTTAAAATTGTTACAGCTTCCAAGTTTCCGGGGCTCAACGCACTCGGCCTCGCGATTGGTAGAAGTGACATTGAAGTGGATGGCCTTGTGAACCTCCACAATCATCCAAGAGCCACTGAGATGATCTATGTCAGCCAAGGTGATGTAGTCGCTGCGTTTCTTGACACTCGGAACCAGCTCTTCCAGAAGATTCTCAGGGCTGGTGATGTGTTTGTGATCCCCAAAGGGTTGTTTCACTTCTTGCTGAATCGTGGTGCACAAGTTGCAACTGTGTTCTCTGTGTTTAACAGCCAAAATCCTGGGTCAGGACCACTCACTTCCATACCTTCTGACACGTTGGAATCGGTTCAGAAGATCAAGAGGAAGGTTGTCTCACTTTCTGAGTCAGAACTTGATGGTGTTAGTGATTTGACTTCTGCAGTGTTGGATATCATTTACAGTTAA 687 0.4425 MKIKSHFSFSLMFLIGIAISHTHVSLAECDNVKDYCPTIPPQKQTIFLNGFPCENPNNTIAHDFKSMELSKPGSRDKLGSLVKIVTASKFPGLNALGLAIGRSDIEVDGLVNLHNHPRATEMIYVSQGDVVAAFLDTRNQLFQKILRAGDVFVIPKGLFHFLLNRGAQVATVFSVFNSQNPGSGPLTSIPSDTLESVQKIKRKVVSLSESELDGVSDLTSAVLDIIYS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1293 228 Pfam Cupin 76 188 IPR006045 -
Gso6g1293 228 CDD cupin_OxOx 30 204 - -
Gso6g1293 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 14 213 - -
Gso6g1293 228 SUPERFAMILY RmlC-like cupins 72 197 IPR011051 -
Gso6g1293 228 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Gso6g1293 228 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Gso6g1293 228 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Gso6g1293 228 SMART Cupin_1_3 81 206 IPR006045 -
Gso6g1293 228 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Gso6g1293 228 Gene3D Jelly Rolls 27 215 IPR014710 -
Gso6g1293 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1293 Gso-Chr6 12616076 12617011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1293 22 203 Miscellaneous Gene Families AT3G05930 35.000 2.66e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1293 - - gmx:100809017 451.44