Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1264 ATGGCGACAAAAGCTTTGTCCTTCGCTCTGTCTCTCAATGACCTCACCAATAACCACTTCTCTTCCAATACGCCACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGTACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTCTTATTGGTGTCTTGACCACTGACAATTCCAGAACGGATGAGGAACTGCTTCACATGTCTAAGTCATGGGACATTGTTGGTAAGGATCTAATAAGCGGAGTATCATGCAAAACTCCACATGAATGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACCGTTGTTCCATGTACATGGCCAGCATCAGAAACTTTGAAGATGAAGCCAAATGGGGTTATTTTCAGCAATGGCCCTGGAGATCCATCTGCTGTTCCTTATGCCATCGAAACTGTAAAGAATATCATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGTCATCAATTGTTAGGCCAGGCTTTAGGAGGTAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGCAACCTTCGAAGTGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCTGCCACACTGCCGGAAGGAGTGGAGGTTACTCATATCAATCTAAATGATGGAAGTTGTGCTGGTCTTGCTTTCCCTGCTCAACAGCTTATGTCTCTTCAATACCATCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACATTTTTAGGGAGTTTATAGAGCTAATGAAGCAAGGGAAAAACAGAACAAAGGGAAGGCTACACCAACTATCAACAGCACATGCTTTGGATGCATAA 1317 0.432 MATKALSFALSLNDLTNNHFSSNTPHTAAKVSVFTVKCSSSGGGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESIQCFLAGLVIRSLSISTSNWRCKKDLGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLTTDNSRTDEELLHMSKSWDIVGKDLISGVSCKTPHEWVDKTKQQWEFSKVPGETFHVVAYDFGIKHNILRRLASYGCKITVVPCTWPASETLKMKPNGVIFSNGPGDPSAVPYAIETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRSGHVEISAQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAQQLMSLQYHPEASPGPHDSDYIFREFIELMKQGKNRTKGRLHQLSTAHALDA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1264 438 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 52 196 IPR036480 -
Gso6g1264 438 SMART CPSase_sm_chain_2 51 181 IPR002474 -
Gso6g1264 438 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 31 419 - -
Gso6g1264 438 Gene3D - 51 199 IPR036480 -
Gso6g1264 438 Gene3D - 200 420 IPR029062 -
Gso6g1264 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Gso6g1264 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Gso6g1264 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Gso6g1264 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Gso6g1264 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Gso6g1264 438 CDD GATase1_CPSase 237 413 IPR035686 -
Gso6g1264 438 Pfam Glutamine amidotransferase class-I 240 414 IPR017926 -
Gso6g1264 438 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 53 418 IPR006274 GO:0004088|GO:0006207|GO:0006541
Gso6g1264 438 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 422 - -
Gso6g1264 438 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 31 419 - -
Gso6g1264 438 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 55 179 IPR002474 -
Gso6g1264 438 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Gso6g1264 438 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Gso6g1264 438 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Gso6g1264 438 Hamap Carbamoyl-phosphate synthase small chain [carA]. 51 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Gso6g1264 438 PRINTS Anthranilate synthase component II signature 279 288 - -
Gso6g1264 438 PRINTS Anthranilate synthase component II signature 306 317 - -
Gso6g1264 438 PRINTS Anthranilate synthase component II signature 391 404 - -
Gso6g1264 438 SUPERFAMILY Class I glutamine amidotransferase-like 220 418 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1264 Gso-Chr6 12325581 12328956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1264 K01956 - gmx:100806168 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1811 4 48330872 48334299 Gso6g1264 6 12325581 12328956 GST